View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14447_low_8 (Length: 377)
Name: NF14447_low_8
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 26125471 - 26125231
Alignment:
| Q |
24 |
gccgcaacccaaaatcaaaagataaataaggattcttagctttcaaccacccgtaaaacaataatctgactctatctattggttgatcaattgattcctc |
123 |
Q |
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| T |
26125471 |
gccgcaacccaaaatcaaaagataaacaaggattcttagctttcaaccacccgtaagacaataatctaactctatctattagttgatcaattgattcctc |
26125372 |
T |
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| Q |
124 |
ctccttgttattaaaagaattgttgttcatttccttttaaattatccacacacaagcaagccacaacaattgtatcnnnnnnngagctgactttgaaaaa |
223 |
Q |
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| T |
26125371 |
ctccttgttattaaaacaattgttgttcatttccttttaaattatccacacacaagcaagccacaccaattgtatctttttttgagctgactttgaaaaa |
26125272 |
T |
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| Q |
224 |
ccacccaaattactaaaatgaggaatgtgatcagacatact |
264 |
Q |
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| T |
26125271 |
ccacccaaattactaaaatgaagaatgtgatcagacatact |
26125231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 273 - 364
Target Start/End: Complemental strand, 26123950 - 26123859
Alignment:
| Q |
273 |
ccggttactatccgtagctatacctaattattcatacatgcacatgttaggagtaggaaaatgttagaccggaattacccaaaaagaataat |
364 |
Q |
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| T |
26123950 |
ccggttactatccgtagctatacctaattattcatacatgcacatgttaggagtaggaaaatgttagaccggaattacccaaaaagaataat |
26123859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 26141862 - 26141701
Alignment:
| Q |
24 |
gccgcaacccaaaatcaaaagataaataaggattcttagctttcaaccacccgtaaaacaataatctgactctatctattggttgatcaattgattcctc |
123 |
Q |
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| T |
26141862 |
gccgcatccaaaaatcaaaagataaacaagggttcttagctttcaaccaccagtaagacaataatctgactctatctagaagttgatcaattgattcc-- |
26141765 |
T |
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| Q |
124 |
ctccttgttattaaaagaattgttgttcatttccttttaaattatccacacacaagcaagccaca |
188 |
Q |
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|||||||||| |||| ||| ||||||| ||||||| ||||||| || |||||||||||||||| |
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| T |
26141764 |
-tccttgttatcaaaacaatggttgttcctttccttccaaattattcatacacaagcaagccaca |
26141701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 26133172 - 26133122
Alignment:
| Q |
287 |
tagctatacctaattattcatacatgcacatgttaggagtaggaaaatgtt |
337 |
Q |
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| T |
26133172 |
tagctatacctaattattcatacatgcacatgttagaagtaggaaaatgtt |
26133122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 26138138 - 26138096
Alignment:
| Q |
207 |
gagctgactttgaaaaaccacccaaattactaaaatgaggaat |
249 |
Q |
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| T |
26138138 |
gagctcactttgaaaaaccacccaaattattaaaatgaagaat |
26138096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 5229620 - 5229567
Alignment:
| Q |
122 |
tcctccttgttattaaaagaattgttgttcatttccttttaaattatccacaca |
175 |
Q |
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| T |
5229620 |
tcctctttgttattaaaaaaatggttgttcgtttcctttcaaattatccacaca |
5229567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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