View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14447_low_9 (Length: 376)
Name: NF14447_low_9
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 32765246 - 32764899
Alignment:
| Q |
19 |
aacatgtcatgtctaaattgaaggagtaatatggttgaaaccatttatttatactgtaaagtgattttctttattcggttcacatctaaatgtttggtat |
118 |
Q |
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| T |
32765246 |
aacatggcatgtctaaattgaaggagtaatatggttgaaaccatttatttatactgtaaagtgattttctttattcggttcacatctaaatgtttggtat |
32765147 |
T |
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| Q |
119 |
tataattccttgaatatactttgttgaatggttggttgcatgcaaatatatatagctctcctacattgatcttatatcataagaattgaaggaaaaataa |
218 |
Q |
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| T |
32765146 |
tataattccttgaatatactttgttgaatggttggttgcatgcaaatatatatagctctcctacattgatcttatatcataagaattgaaggaaaaataa |
32765047 |
T |
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| Q |
219 |
ttgatcattcacattaaaattaatggaagtgaaaagagtacaaactttagcttgtaatcagctaaaggagcttccaccacaattcattcgcttagcaaat |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32765046 |
ttgatcattcacattaaaattaatggaagtcaaaagagtacaaactttagcttgtaatcagctaaaggagcttccaccacaattcattcgcttagcaaat |
32764947 |
T |
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| Q |
319 |
gaaaggccagagaatacaaaggccatggagggtgttactgtgcctatg |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764946 |
gaaaggccagagaatacaaaggccatggagggtgttactgtgcctatg |
32764899 |
T |
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