View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14448_high_2 (Length: 363)
Name: NF14448_high_2
Description: NF14448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14448_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 33460752 - 33461103
Alignment:
| Q |
11 |
cataggtgtgacggatatgttgagattccacatcaactacaggtgtgaccaatgttgtccttatagcgctcgatgaatgcttagttcttgccccttgagc |
110 |
Q |
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| T |
33460752 |
cataggtgtgacgggtatgttgagattccacatcaactacaggtgtgaccaatgttgtccttatagcgctcgatgaatgcttagttcttgccccttgagc |
33460851 |
T |
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| Q |
111 |
tagattttggagttagttaagcctagctcaaattctaagacaattaatgcaatgtacttatatacatcattatttacataaattccactgttgattatta |
210 |
Q |
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| T |
33460852 |
tagattttgaagttagttaagcctagctcaaattctaagacaattaatgcaatgtacttatatacatcattatttacataaattccacagttgattatta |
33460951 |
T |
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| Q |
211 |
atatcatctctatgtttacatttttatcatgtttactgcatgcatagccatgagaccggtgatgctgtatagaactgctattatcccctttatttctccc |
310 |
Q |
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| T |
33460952 |
atatcatctctatgtttacatttttatcatgtttactgcatgcatagccatgagactggtgatgctgtatagaactgctattatcccctttatttctccc |
33461051 |
T |
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| Q |
311 |
tttttctgttcaagttgatggattccgtgtaatatgcatagccataagaccc |
362 |
Q |
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| T |
33461052 |
tttttctgttcaagttgatggattccgtgtaatatgcatagccataagaccc |
33461103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 33461085 - 33461136
Alignment:
| Q |
250 |
atgcatagccatgagaccggtgatgctgtatagaactgctattatccccttt |
301 |
Q |
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| T |
33461085 |
atgcatagccataagacccatgatgctgtatagaactgctattatccccttt |
33461136 |
T |
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