View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14448_high_3 (Length: 355)

Name: NF14448_high_3
Description: NF14448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14448_high_3
NF14448_high_3
[»] chr3 (21 HSPs)
chr3 (6-326)||(840573-840893)
chr3 (163-281)||(21974307-21974425)
chr3 (163-281)||(21996738-21996856)
chr3 (163-281)||(22157416-22157534)
chr3 (163-282)||(29014690-29014809)
chr3 (163-282)||(49040844-49040963)
chr3 (163-282)||(32677477-32677596)
chr3 (163-282)||(36737834-36737953)
chr3 (163-288)||(1351990-1352115)
chr3 (163-282)||(18997125-18997244)
chr3 (163-282)||(18999664-18999783)
chr3 (163-282)||(29371538-29371657)
chr3 (163-282)||(39518565-39518684)
chr3 (163-282)||(41349371-41349490)
chr3 (163-285)||(39528907-39529029)
chr3 (163-282)||(38855475-38855594)
chr3 (163-282)||(39806979-39807098)
chr3 (163-282)||(32840106-32840226)
chr3 (174-254)||(55367721-55367801)
chr3 (282-327)||(34805761-34805806)
chr3 (195-262)||(28228625-28228695)
[»] chr4 (17 HSPs)
chr4 (6-136)||(50234952-50235081)
chr4 (163-282)||(26025528-26025647)
chr4 (163-281)||(39482020-39482138)
chr4 (163-282)||(30469213-30469332)
chr4 (163-279)||(8955779-8955895)
chr4 (163-264)||(36971206-36971307)
chr4 (164-256)||(33108924-33109016)
chr4 (163-282)||(45590900-45591019)
chr4 (62-129)||(6071852-6071919)
chr4 (163-282)||(34334490-34334613)
chr4 (174-282)||(49162257-49162365)
chr4 (163-282)||(18835865-18835984)
chr4 (163-264)||(33288422-33288524)
chr4 (195-271)||(50774069-50774145)
chr4 (281-328)||(48007277-48007324)
chr4 (281-327)||(13557447-13557493)
chr4 (281-326)||(55157627-55157672)
[»] chr8 (14 HSPs)
chr8 (163-282)||(32183481-32183600)
chr8 (163-283)||(33837728-33837848)
chr8 (163-287)||(45334271-45334395)
chr8 (163-282)||(2508796-2508915)
chr8 (163-282)||(13469508-13469626)
chr8 (62-136)||(4905804-4905878)
chr8 (174-282)||(28379116-28379224)
chr8 (163-283)||(38495471-38495591)
chr8 (202-285)||(9740183-9740266)
chr8 (164-290)||(2626230-2626355)
chr8 (163-282)||(25106369-25106488)
chr8 (62-129)||(26723448-26723515)
chr8 (284-327)||(8051921-8051964)
chr8 (224-271)||(29598605-29598652)
[»] chr7 (29 HSPs)
chr7 (164-285)||(48049161-48049283)
chr7 (163-266)||(12252230-12252333)
chr7 (177-282)||(46690035-46690140)
chr7 (176-282)||(9215463-9215569)
chr7 (164-281)||(31858093-31858210)
chr7 (163-270)||(5514937-5515044)
chr7 (166-271)||(33974655-33974760)
chr7 (174-282)||(6389893-6390001)
chr7 (163-282)||(17904321-17904440)
chr7 (163-282)||(22753068-22753187)
chr7 (163-282)||(26770337-26770456)
chr7 (163-282)||(46467335-46467454)
chr7 (163-283)||(6387691-6387811)
chr7 (163-282)||(9332478-9332598)
chr7 (163-282)||(29890826-29890945)
chr7 (163-264)||(29427182-29427283)
chr7 (163-282)||(4405267-4405386)
chr7 (163-282)||(31502653-31502773)
chr7 (163-283)||(37179330-37179451)
chr7 (183-265)||(7839234-7839316)
chr7 (281-327)||(9691070-9691116)
chr7 (281-326)||(4125481-4125526)
chr7 (213-262)||(19523813-19523862)
chr7 (176-264)||(33379007-33379095)
chr7 (163-262)||(9876421-9876520)
chr7 (163-245)||(41921892-41921973)
chr7 (133-162)||(7839176-7839205)
chr7 (250-282)||(12252069-12252101)
chr7 (250-282)||(31858339-31858371)
[»] chr2 (9 HSPs)
chr2 (163-282)||(21727830-21727949)
chr2 (163-282)||(15233913-15234032)
chr2 (163-264)||(35792925-35793026)
chr2 (163-283)||(41252573-41252694)
chr2 (163-283)||(43040848-43040968)
chr2 (163-282)||(44104546-44104666)
chr2 (164-271)||(41643053-41643160)
chr2 (163-263)||(31903400-31903499)
chr2 (281-326)||(32447903-32447948)
[»] chr1 (16 HSPs)
chr1 (163-282)||(37875727-37875845)
chr1 (163-281)||(1236071-1236189)
chr1 (163-283)||(4055642-4055762)
chr1 (163-277)||(49112282-49112393)
chr1 (163-282)||(47669277-47669396)
chr1 (163-282)||(10737701-10737820)
chr1 (163-282)||(39241310-39241429)
chr1 (163-282)||(46220417-46220536)
chr1 (163-280)||(3384597-3384714)
chr1 (163-271)||(4817427-4817535)
chr1 (163-279)||(9831661-9831777)
chr1 (163-282)||(48564975-48565094)
chr1 (163-282)||(8889600-8889720)
chr1 (163-238)||(26842598-26842673)
chr1 (202-262)||(18127047-18127107)
chr1 (281-326)||(52053850-52053895)
[»] chr6 (10 HSPs)
chr6 (163-282)||(29452542-29452661)
chr6 (177-282)||(18742119-18742223)
chr6 (163-282)||(2543239-2543358)
chr6 (163-263)||(7156256-7156356)
chr6 (174-282)||(32274603-32274711)
chr6 (163-282)||(27312114-27312235)
chr6 (209-282)||(786525-786597)
chr6 (163-282)||(31170990-31171109)
chr6 (182-264)||(5008308-5008390)
chr6 (218-282)||(8504733-8504797)
[»] chr5 (16 HSPs)
chr5 (163-282)||(29875112-29875231)
chr5 (163-282)||(4695162-4695281)
chr5 (163-270)||(4939680-4939787)
chr5 (163-283)||(12398945-12399065)
chr5 (195-271)||(19574876-19574952)
chr5 (163-282)||(22645909-22646028)
chr5 (163-282)||(23090456-23090575)
chr5 (163-282)||(34208696-34208815)
chr5 (163-271)||(22528163-22528270)
chr5 (163-264)||(4145852-4145953)
chr5 (213-286)||(42757801-42757874)
chr5 (163-271)||(3077755-3077863)
chr5 (163-271)||(12096214-12096321)
chr5 (178-254)||(594124-594200)
chr5 (281-328)||(8383969-8384016)
chr5 (165-271)||(32144285-32144392)
[»] scaffold0103 (1 HSPs)
scaffold0103 (163-264)||(44778-44877)
[»] scaffold0276 (1 HSPs)
scaffold0276 (281-326)||(2092-2137)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 6 - 326
Target Start/End: Original strand, 840573 - 840893
Alignment:
Q  6 gagagaggggaaatgttttggcgggatgggatgagtcacagattttgaccacatgacagtgtgtgattggataatgaagggtgtatgtaaagtggtatga 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||    
T  840573 gagagaggggaaatgttttggcgggatgggatgagtcacagattttgaccgcatggcagtgtgtgattggataatgaaaggtgtatgtaaagtggtatga 840672  T
Q  106 aaaaagggtgttcatggataattaccctaaaattattaaaggagttgtgacatttgggaatttaatcctaaataaggacattttagtccaaaacatacaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  840673 aaaaagggtgttcatggataattaccctaaaattattaaaggagttgtgacatttgggaatttaatcctaaataaggacattttagtccaaaacatacaa 840772  T
Q  206 atttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatggagggagtacaatatattaataatttacacag 305  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  840773 atttttctatactttaattatttcttaagacttgtgccaagagttaaaacatcaaaagataaaaaatggagggagtacaatatattaataatttacacag 840872  T
Q  306 tgaatattttttattctaata 326  Q
    |||||||||||||||||||||    
T  840873 tgaatattttttattctaata 840893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 21974307 - 21974425
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    ||||||||| ||||||||||| ||||||||| |||| | |||||| ||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||    
T  21974307 gaatttaatactaaataaggatattttagtcaaaaatagacaaatatttatatactttaattactccttaaaacttgtgtcaagagttaaaacatcaaaa 21974406  T
Q  263 gataaaaaatggagggagt 281  Q
    || || |||||||||||||    
T  21974407 gaaaataaatggagggagt 21974425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 21996738 - 21996856
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    ||||||||| ||||||||||| ||||||||| |||| | |||||| ||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||    
T  21996738 gaatttaatactaaataaggatattttagtcaaaaatagacaaatatttatatactttaattactccttaaaacttgtgtcaagagttaaaacatcaaaa 21996837  T
Q  263 gataaaaaatggagggagt 281  Q
    || || |||||||||||||    
T  21996838 gaaaataaatggagggagt 21996856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 22157416 - 22157534
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    ||||||||| ||||||||||||||||||||| |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  22157416 gaatttaatactaaataaggacattttagtcaaaaatagacaaatatttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 22157515  T
Q  263 gataaaaaatggagggagt 281  Q
    || || |||||||||||||    
T  22157516 gaaaataaatggagggagt 22157534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 29014809 - 29014690
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||| |||||| ||| ||||||||||||| ||||||| |||||||||||||| |||||||||||||    
T  29014809 gaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattacttcttaaaacttgtgtcaagagctaaaacatcaaaa 29014710  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  29014709 gaaaaggaatggagggagta 29014690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 49040963 - 49040844
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||  ||||||| | || |||||||||| || ||| |||||||||||||    
T  49040963 gaatttaatcataaacaaggacattttagtctaaaacatacaaatatttctataacttaattactcctcaagacttgtgccaggagctaaaacatcaaaa 49040864  T
Q  263 gataaaaaatggagggagta 282  Q
    ||||||||  ||||||||||    
T  49040863 gataaaaagcggagggagta 49040844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 32677596 - 32677477
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||| |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  32677596 gaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 32677497  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  32677496 gaaaatgaatggagggagta 32677477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 36737953 - 36737834
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||| |||| |||  |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  36737953 gaatttaatgataaataaggatatttaagtaaaaaacacacaaatgtttatatactttaattattccttaaaacttgtgtcaagagctaaaacatcaaaa 36737854  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  36737853 gaaaaggaatggagggagta 36737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 1352115 - 1351990
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  1352115 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 1352016  T
Q  263 gataaaaaatggagggagtacaatat 288  Q
    || ||  |||||||||||||| ||||    
T  1352015 gaaaaggaatggagggagtactatat 1351990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 18997125 - 18997244
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||  |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  18997125 gaatttaatgataaataaggacatttaagtaaaaaacgcacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 18997224  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  18997225 gaaaaggaatggagggagta 18997244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 18999664 - 18999783
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||  |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  18999664 gaatttaatgataaataaggacatttaagtaaaaaacgcacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 18999763  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  18999764 gaaaaggaatggagggagta 18999783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 29371657 - 29371538
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||| |||||| ||| ||||||||||||| | ||||| | |||||||||||| |||||||||||||    
T  29371657 gaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaatttgtgtcaagagctaaaacatcaaaa 29371558  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  29371557 gaaaatgaatggagggagta 29371538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 39518565 - 39518684
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||| |||||| ||| ||||||||||||| |  |||| |||||||||||||| |||||||||||||    
T  39518565 gaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactcattaaaacttgtgtcaagagctaaaacatcaaaa 39518664  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  39518665 gaaaaggaatggagggagta 39518684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 41349490 - 41349371
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  41349490 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 41349391  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  41349390 gaaaaggaatggagggagta 41349371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 39528907 - 39529029
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| ||||||||||| || |||||||||||||    
T  39528907 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaaaagctaaaacatcaaaa 39529006  T
Q  263 gataaaaaatggagggagtacaa 285  Q
    || ||  ||||||||||||||||    
T  39529007 gaaaaggaatggagggagtacaa 39529029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 38855475 - 38855594
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||||||||||||  ||| || |||||| ||| |||| |||||||| | ||||| ||||||| ||| || |||||||||||||    
T  38855475 gaatttaatgataaataaggacattttagtaaaaatcacacaaatatttatatattttaattactccttaaaacttgtgccaatagctaaaacatcaaaa 38855574  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  38855575 gaaaaggaatggagggagta 38855594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 39807098 - 39806979
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||| |||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  39807098 gaatttaatgataaataagaacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 39806999  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||| ||||||||    
T  39806998 gaaaaggaatgaagggagta 39806979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 32840106 - 32840226
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaa-catacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaa 261  Q
    |||||||||  |||||||| |||||| |||  |||| || |||||| ||| ||||||||||||| | ||||| |||||||||||||| ||||| ||||||    
T  32840106 gaatttaatgataaataagaacatttaagtaaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaatatcaaa 32840205  T
Q  262 agataaaaaatggagggagta 282  Q
    ||| ||  |||||||||||||    
T  32840206 agaaaatgaatggagggagta 32840226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 55367721 - 55367801
Alignment:
Q  174 taaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaa 254  Q
    ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||| ||||||| |||||    
T  55367721 taaataaggacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtatcaagagctaaaa 55367801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 34805806 - 34805761
Alignment:
Q  282 acaatatattaataatttacacagtgaatattttttattctaatat 327  Q
    ||||||||||||||||||| ||| ||| |||||| |||||||||||    
T  34805806 acaatatattaataatttatacaatgagtattttatattctaatat 34805761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 28228625 - 28228695
Alignment:
Q  195 aaaacatacaaatttttctatactttaattatt---tcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||| |||||| ||| ||||||||||| |||   |||||| ||||||||||||||  ||||||||||||    
T  28228625 aaaacacacaaatgtttatatactttaataattacttcttaaaacttgtgtcaagagccaaaacatcaaaa 28228695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 50235081 - 50234952
Alignment:
Q  6 gagagaggggaaatgttttggcgggatgggatgagtcacagattttgaccacatgacagtgtgtgattggataatgaagggtgtatgtaaagtggtatga 105  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50235081 gagagaggggaaatgttttggcgggatgggatgagtcaaagattttgaccacatggcagtgtgtgattggataatgaagggtgtatgtaaagtggtatga 50234982  T
Q  106 aaaaagggtgttcatggataattaccctaaa 136  Q
     ||||||||||||||||||||||| ||||||    
T  50234981 -aaaagggtgttcatggataattatcctaaa 50234952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 26025647 - 26025528
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||| |||||| |||||||||||||    
T  26025647 gaatttaatcataaataaggacattttagtccaaaacatacaaatatttctatactttaattactccctaagacttgtgccaagagctaaaacatcaaaa 26025548  T
Q  263 gataaaaaatggagggagta 282  Q
    ||||||||| ||||||||||    
T  26025547 gataaaaaacggagggagta 26025528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 39482020 - 39482138
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    ||||||||| ||||||||||||||||||||| |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  39482020 gaatttaatactaaataaggacattttagtcaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 39482119  T
Q  263 gataaaaaatggagggagt 281  Q
    || || |||||||||||||    
T  39482120 gaaaagaaatggagggagt 39482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 30469332 - 30469213
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||| || ||||||| |||  |||| | |||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  30469332 gaatttaatgataaacaatgacatttaagtaaaaaatacacaaatatttatatactttaattacttcttaaaacttgtgtcaagagttaaaacatcaaaa 30469233  T
Q  263 gataaaaaatggagggagta 282  Q
    || || ||||| ||||||||    
T  30469232 gaaaagaaatgaagggagta 30469213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 8955895 - 8955779
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  8955895 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 8955796  T
Q  263 gataaaaaatggaggga 279  Q
    || ||  ||||||||||    
T  8955795 gaaaaggaatggaggga 8955779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 36971206 - 36971307
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||| |||| |||  |||||| |||||| ||| ||||||||||||| ||||||| ||||||||||| || |||||||||||||    
T  36971206 gaatttaatgataaataaggatatttaagtaaaaaacacacaaatgtttatatactttaattacttcttaaaacttgtgtcaaaagctaaaacatcaaaa 36971305  T
Q  263 ga 264  Q
    ||    
T  36971306 ga 36971307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 33109016 - 33108924
Alignment:
Q  164 aatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaaca 256  Q
    ||||||||  |||||||| |  ||||||  ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||    
T  33109016 aatttaattataaataagaattttttagctcaaaacatagaaatatttatataatttaattatttcttaagacttgtgtcaagagttaaaaca 33108924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 45590900 - 45591019
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||| |||||| |||  |||||| |||||| ||| ||||||||||||| | ||||  |||| ||||||||| |||||||||||||    
T  45590900 gaatttaatgataaataagaacatttaagtaaaaaacacacaaatgtttatatactttaattactccttacaacttatgtcaagagctaaaacatcaaaa 45590999  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  45591000 gaaaatgaatggagggagta 45591019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 6071852 - 6071919
Alignment:
Q  62 cagtgtgtgattggataatgaagggtgtatgtaaagtggtatgaaaaaagggtgttcatggataatta 129  Q
    ||||||||||||| |||||||| ||||| | |||||||||||||||| |||||||| |||||||||||    
T  6071852 cagtgtgtgattgaataatgaaaggtgtgtataaagtggtatgaaaagagggtgtttatggataatta 6071919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 34334490 - 34334613
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttct---atactttaattatttcttaagacttgtgtcaagagttaaaacatca 259  Q
    |||||||||  ||||||| ||||||| |||  ||||||||||||| ||| |   |||||||||||| | |||||||||||||| ||||||| || |||||    
T  34334490 gaatttaatgataaataaagacatttaagtaaaaaacatacaaatgtttattatatactttaattactccttaagacttgtgttaagagtttaatcatca 34334589  T
Q  260 aaagataaa-aaatggagggagta 282  Q
    ||||| |||  |||||||||||||    
T  34334590 aaagaaaaaggaatggagggagta 34334613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 49162257 - 49162365
Alignment:
Q  174 taaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatg 273  Q
    |||||||||||||||||||  ||| || |||||| ||| ||||||||||||| |  |||| ||||||| ||| || ||||||||||||||| |   ||||    
T  49162257 taaataaggacattttagtaaaaatcacacaaatatttatatactttaattactctttaaaacttgtgccaatagctaaaacatcaaaagaaagggaatg 49162356  T
Q  274 gagggagta 282  Q
    |||||||||    
T  49162357 gagggagta 49162365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 18835865 - 18835984
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||||||||||||  |||||| |||||| ||| |||| |||||||| | ||||| | |||||  || || |||||||||||||    
T  18835865 gaatttaatgataaataaggacattttagttaaaaacacacaaatatttatatattttaattactccttaaaatttgtgcgaaaagataaaacatcaaaa 18835964  T
Q  263 gataaaaaatggagggagta 282  Q
     | || ||||||| ||||||    
T  18835965 taaaataaatggaaggagta 18835984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 33288524 - 33288422
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaac-atacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaa 261  Q
    |||||||||  ||||||||||||||| |||  ||||  | |||||| ||| ||||||||||||| | ||||| ||||||||||| || ||||||||||||    
T  33288524 gaatttaatgataaataaggacatttaagtaaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaatagctaaaacatcaaa 33288425  T
Q  262 aga 264  Q
    |||    
T  33288424 aga 33288422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 50774145 - 50774069
Alignment:
Q  195 aaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaa 271  Q
    |||||| |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||| |||| | ||||||    
T  50774145 aaaacacacaaatatttatatactttaattactccttaaaacttgtgtcaagagctaaaacataaaaaaaaaaaaaa 50774069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 48007277 - 48007324
Alignment:
Q  281 tacaatatattaataatttacacagtgaatattttttattctaatatg 328  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  48007277 tacaatatattaataatttatacaatgaatattttatattctaatatg 48007324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 13557493 - 13557447
Alignment:
Q  281 tacaatatattaataatttacacagtgaatattttttattctaatat 327  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||||    
T  13557493 tacaatatactaataatttacacaatgaatattttatattctaatat 13557447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 55157672 - 55157627
Alignment:
Q  281 tacaatatattaataatttacacagtgaatattttttattctaata 326  Q
    ||||||||||||| |||||| ||| |||||||||| ||||||||||    
T  55157672 tacaatatattaacaatttatacaatgaatattttatattctaata 55157627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 32183600 - 32183481
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| | ||||||||||||| |||||| |||||||||||||    
T  32183600 gaatttaatcataaataaggacattttagtccaaaacatacaaatatttctatgctttaattactccttaagacttgtgccaagagctaaaacatcaaaa 32183501  T
Q  263 gataaaaaatggagggagta 282  Q
    ||||||||||||||||||||    
T  32183500 gataaaaaatggagggagta 32183481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 33837848 - 33837728
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  33837848 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 33837749  T
Q  263 gataaaaaatggagggagtac 283  Q
    || ||  ||||||||||||||    
T  33837748 gaaaaggaatggagggagtac 33837728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 287
Target Start/End: Complemental strand, 45334395 - 45334271
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  45334395 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 45334296  T
Q  263 gataaaaaatggagggagtacaata 287  Q
    || ||  ||||||||||||| ||||    
T  45334295 gaaaaggaatggagggagtaaaata 45334271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 2508915 - 2508796
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  2508915 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 2508816  T
Q  263 gataaaaaatggagggagta 282  Q
    || || |||| || ||||||    
T  2508815 gaaaagaaattgatggagta 2508796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 13469626 - 13469508
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| ||   |||||| |||||| ||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||    
T  13469626 gaatttaatgataaataaggacatttaagga-aaaacacacaaatatttatatactttaattactccttaaaacttgtgtcaagagttaaaacatcaaaa 13469528  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||| ||||||    
T  13469527 gaaaaggaatggaaggagta 13469508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 4905804 - 4905878
Alignment:
Q  62 cagtgtgtgattggataatgaagggtgtatgtaaagtggtatgaaaaaagggtgttcatggataattaccctaaa 136  Q
    ||||||||||||| |||||||||||||| | || |||||||||||||||||||||||||| ||||||| ||||||    
T  4905804 cagtgtgtgattgaataatgaagggtgtgtatagagtggtatgaaaaaagggtgttcatgaataattagcctaaa 4905878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 28379116 - 28379224
Alignment:
Q  174 taaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatg 273  Q
    ||||||||||||||| |||  |||||  |||||| ||| ||||||||||| | | ||||| |||||||||||||| ||||||||||||||| ||  ||||    
T  28379116 taaataaggacatttaagtaaaaaacgcacaaatgtttatatactttaatcactccttaaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatg 28379215  T
Q  274 gagggagta 282  Q
    |||||||||    
T  28379216 gagggagta 28379224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 38495591 - 38495471
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||| |||| |||  |||||| |||||| ||| |||| |||||||| | ||||| |||| ||||||||| |||||||||||||    
T  38495591 gaatttaatgataaataaggatatttaagtaaaaaacacacaaatgtttatatattttaattactccttaaaacttatgtcaagagctaaaacatcaaaa 38495492  T
Q  263 gataaaaaatggagggagtac 283  Q
    || ||  ||||||||||||||    
T  38495491 gaaaatgaatggagggagtac 38495471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 9740183 - 9740266
Alignment:
Q  202 acaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatggagggagtacaa 285  Q
    |||||| ||| ||||||||||||| | | ||| |||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  9740183 acaaatgtttatatactttaattactccctaaaacttgtgtcaagagttaaaacatcaaaagaaaaggaatggagggagtacaa 9740266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 290
Target Start/End: Complemental strand, 2626355 - 2626230
Alignment:
Q  164 aatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaag 263  Q
    ||||||||  ||||||||||||||| | |  |||||| |||||| ||| ||||||||||||| | ||||| |||||||||||||| ||||||||||||||    
T  2626355 aatttaatgataaataaggacatttaaata-aaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaag 2626257  T
Q  264 ataaaaaatggagggagtacaatatat 290  Q
    | |||  |||||  ||||||| |||||    
T  2626256 aaaaaggatggatagagtacattatat 2626230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 25106369 - 25106488
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||| |||| | |  |||||| |||| | ||| ||||||||||||| | ||||| ||||||||||| || |||||||||||||    
T  25106369 gaatttaatgataaataaggaaatttaaataaaaaacacacaagtgtttatatactttaattactccttaaaacttgtgtcaaaagctaaaacatcaaaa 25106468  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  25106469 gaaaaggaatggagggagta 25106488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 26723515 - 26723448
Alignment:
Q  62 cagtgtgtgattggataatgaagggtgtatgtaaagtggtatgaaaaaagggtgttcatggataatta 129  Q
    ||||||||||||| |||||||||| |||   || ||| ||| ||||||||||||||||||||||||||    
T  26723515 cagtgtgtgattgaataatgaaggatgtgcatagagtcgtaggaaaaaagggtgttcatggataatta 26723448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 8051921 - 8051964
Alignment:
Q  284 aatatattaataatttacacagtgaatattttttattctaatat 327  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||    
T  8051921 aatatattaataatttatacaatgaatattttatattctaatat 8051964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 29598605 - 29598652
Alignment:
Q  224 tatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaa 271  Q
    |||| ||||||||||  || ||||||||||||||||||||||||||||    
T  29598605 tattccttaagacttaagttaagagttaaaacatcaaaagataaaaaa 29598652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 48049161 - 48049283
Alignment:
Q  164 aatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaag 263  Q
    ||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||    
T  48049161 aatttaatcataaataaggacattttagtcaaaaacatacaaatatttctatactttaattactacttaagacttgtgccaagagctaaaacatcaaaag 48049260  T
Q  264 at-aaaaaatggagggagtacaa 285  Q
    || |||||| |||||||||||||    
T  48049261 ataaaaaaacggagggagtacaa 48049283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 12252230 - 12252333
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||||| |||| |||||||||||||||    
T  12252230 gaatttaatcataaataaggacattttagtccaaaacatacaaatatttctatacattaattactccttaagacttgtgccaagtgttaaaacatcaaaa 12252329  T
Q  263 gata 266  Q
    ||||    
T  12252330 gata 12252333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 46690035 - 46690140
Alignment:
Q  177 ataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatggag 276  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||| | ||||||| ||||| |||||| |||||||||||||||||||||||||||    
T  46690035 ataatgacattttagtccaaaacatacaaatatttatatactttaattactccttaagatttgtgccaagagctaaaacatcaaaagataaaaaatggag 46690134  T
Q  277 ggagta 282  Q
    ||||||    
T  46690135 ggagta 46690140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 282
Target Start/End: Complemental strand, 9215569 - 9215463
Alignment:
Q  176 aataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatgga 275  Q
    |||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||| ||||  |||||| ||||||||||||||||||||||| ||    
T  9215569 aataaggacattttagtccaaaacatacaaatatttatgtactttaattacttcttaagatttgtaccaagagctaaaacatcaaaagataaaaaataga 9215470  T
Q  276 gggagta 282  Q
    |||||||    
T  9215469 gggagta 9215463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 31858210 - 31858093
Alignment:
Q  164 aatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaag 263  Q
    ||||||||| |||||||||| |||||| || ||||||||||||| ||| ||| ||||||||| | ||||||| |||||||||||||||||||||||||||    
T  31858210 aatttaatcataaataaggatattttaatcaaaaacatacaaatgtttatattctttaattactccttaagatttgtgtcaagagttaaaacatcaaaag 31858111  T
Q  264 ataaaaaatggagggagt 281  Q
    |||||||| ||| |||||    
T  31858110 ataaaaaacggaaggagt 31858093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 5514937 - 5515044
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||| |||||||| |||||||||| |||||||||||||| ||| |||| ||||||||||  ||||||||||||||||||| ||| |||||||||    
T  5514937 gaatttaatcataaataagaacattttagtacaaaacatacaaatatttttatattttaattattcattaagacttgtgtcaagagctaatacatcaaaa 5515036  T
Q  263 gataaaaa 270  Q
    ||||||||    
T  5515037 gataaaaa 5515044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 33974655 - 33974760
Alignment:
Q  166 tttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagat 265  Q
    ||||||| |||||||||| |||||||||||| |||||| ||| ||||||||||||||||| | ||||||||||||| |||||| |||||| |||||||||    
T  33974655 tttaatcataaataaggatattttagtccaatacataccaatatttctatactttaattactccttaagacttgtgccaagagctaaaacgtcaaaagat 33974754  T
Q  266 aaaaaa 271  Q
    ||||||    
T  33974755 aaaaaa 33974760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 6389893 - 6390001
Alignment:
Q  174 taaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatg 273  Q
    ||||||||||||||| |||  |||||| |||||| ||| |||||||||| || ||||||| |||||||||||||||||||||||||||||| ||| |||     
T  6389893 taaataaggacatttaagtaaaaaacacacaaatatttatatactttaactacttcttaaaacttgtgtcaagagttaaaacatcaaaagaaaaagaatt 6389992  T
Q  274 gagggagta 282  Q
    |||||||||    
T  6389993 gagggagta 6390001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 17904321 - 17904440
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||| |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  17904321 gaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 17904420  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  17904421 gaaaaggaatggagggagta 17904440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 22753187 - 22753068
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||| |||||||||||||||||||| ||||| ||| ||| ||| ||||| |  |||||||||||||| |||  |||||||||||||    
T  22753187 gaatttaatgataaataaagacattttagtccaaaacattcaaatatttttatgcttcaattactcattaagacttgtgtccagaactaaaacatcaaaa 22753088  T
Q  263 gataaaaaatggagggagta 282  Q
     |||| ||||||||||||||    
T  22753087 tataagaaatggagggagta 22753068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 26770337 - 26770456
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||| |||| |||  |||||| |||||| ||| ||||||||||||| | ||||| ||||||||||||| ||||||||||||||    
T  26770337 gaatttaatgataaataaggatatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagaattaaaacatcaaaa 26770436  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  26770437 gaaaatgaatggagggagta 26770456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 46467454 - 46467335
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||| |||||| |||  |||||| |||||| ||| ||||||||||||| | ||||| | ||||||||||||||||||||||||||    
T  46467454 gaatttaatgataaataagaacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaatttgtgtcaagagttaaaacatcaaaa 46467355  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  46467354 gaaaaggaatggagggagta 46467335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 6387811 - 6387691
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  6387811 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 6387712  T
Q  263 gataaaaaatggagggagtac 283  Q
    || ||  |||||||| |||||    
T  6387711 gaaaaggaatggaggaagtac 6387691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 9332478 - 9332598
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaac-atacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaa 261  Q
    ||||||||| ||||||||||||||||||||  ||||  | |||||| ||| ||||||||||||| | ||||| |||||||| ||||| ||||| ||||||    
T  9332478 gaatttaatactaaataaggacattttagtaaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgttaagagctaaaatatcaaa 9332577  T
Q  262 agataaaaaatggagggagta 282  Q
    ||| || ||||||||||||||    
T  9332578 agaaaagaaatggagggagta 9332598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 29890945 - 29890826
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||| |||| | ||| ||||||||||||| | ||||| ||||||||||| || |||||||||||||    
T  29890945 gaatttaatgataaataaggacatttaagtaaaaaacacacaagtgtttatatactttaattactccttaaaacttgtgtcaaaagctaaaacatcaaaa 29890846  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  29890845 gaaaaggaatggagggagta 29890826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 29427283 - 29427182
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||| ||||||| |||  |||||| |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  29427283 gaatttaatgataaataaagacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagaggtaaaacatcaaaa 29427184  T
Q  263 ga 264  Q
    ||    
T  29427183 ga 29427182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 4405267 - 4405386
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||||||||||||  ||| || |||||| ||| |||| |||||||| | ||||| ||||||| ||| || |||||||||||||    
T  4405267 gaatttaatgataaataaggacattttagtaaaaatcacacaaatatttatatattttaattactccttaaaacttgtgccaatagctaaaacatcaaaa 4405366  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  4405367 gaaaaggaatggagggagta 4405386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 31502773 - 31502653
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaa--catacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaa 260  Q
    |||||||||  ||||||||||||||| |||  ||||  || |||||| ||| ||||||||||||| | ||||| |||||  ||||||| |||||||||||    
T  31502773 gaatttaatgataaataaggacatttaagtaaaaaaaacacacaaatgtttatatactttaattactccttaaaacttgcatcaagagctaaaacatcaa 31502674  T
Q  261 aagataaaaaatggagggagta 282  Q
    |||| ||| |||||||||||||    
T  31502673 aaga-aaagaatggagggagta 31502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 37179451 - 37179330
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaa-catacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaa 261  Q
    |||||||||  |||| |||||||||| |||  |||| || |||||| | | |||||||| |||| | ||||| |||||||||||||| ||||||||||||    
T  37179451 gaatttaatgataaacaaggacatttaagtaaaaaaacacacaaatgtctatatactttcattactccttaaaacttgtgtcaagagctaaaacatcaaa 37179352  T
Q  262 agataaaaaatggagggagtac 283  Q
    ||| ||  ||||||||||||||    
T  37179351 agaaaaggaatggagggagtac 37179330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 7839234 - 7839316
Alignment:
Q  183 acattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagat 265  Q
    |||||||| | |||||||||||||| ||| ||||||||||||| | ||||| |||||||  || || ||||| ||||||||||    
T  7839234 acattttatttcaaaacatacaaatatttatatactttaattactccttaatacttgtgataacagctaaaatatcaaaagat 7839316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 9691116 - 9691070
Alignment:
Q  281 tacaatatattaataatttacacagtgaatattttttattctaatat 327  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||||    
T  9691116 tacaatatactaataatttacacaatgaatattttatattctaatat 9691070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 4125526 - 4125481
Alignment:
Q  281 tacaatatattaataatttacacagtgaatattttttattctaata 326  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||    
T  4125526 tacaatatattaataatttatacaatgaatattttatattctaata 4125481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 19523862 - 19523813
Alignment:
Q  213 tatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  19523862 tatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 19523813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 33379095 - 33379007
Alignment:
Q  176 aataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaaga 264  Q
    |||||||||||||||||| ||| | | ||| | || |||||||||||| ||||||||| |||||||  |  | ||||||||||||||||    
T  33379095 aataaggacattttagtctaaaccttccaactattcctatactttaatgatttcttaatacttgtgcaatcacttaaaacatcaaaaga 33379007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 9876421 - 9876520
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||||||||||||  ||| || |||||| ||| |||| |||||||| | ||||| |||| || ||| || |||||||| ||||    
T  9876421 gaatttaatgataaataaggacattttagtaaaaatcacacaaatatttatatattttaattactccttaaaacttatgccaatagctaaaacataaaaa 9876520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 41921973 - 41921892
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaa 245  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||    
T  41921973 gaatttaatgataaataaggacatttaagtaaaaaa-acacaaatgtttatatactttaattactccttaaaacttgtgtcaa 41921892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 7839176 - 7839205
Alignment:
Q  133 taaaattattaaaggagttgtgacatttgg 162  Q
    ||||||||||||||||||||||||||||||    
T  7839176 taaaattattaaaggagttgtgacatttgg 7839205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 12252101 - 12252069
Alignment:
Q  250 taaaacatcaaaagataaaaaatggagggagta 282  Q
    ||||||||||||||| |||||||||||||||||    
T  12252101 taaaacatcaaaagaaaaaaaatggagggagta 12252069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 31858339 - 31858371
Alignment:
Q  250 taaaacatcaaaagataaaaaatggagggagta 282  Q
    ||||||||||||||| |||||||||||||||||    
T  31858339 taaaacatcaaaagaaaaaaaatggagggagta 31858371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 21727830 - 21727949
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||| ||||| | ||||||||||||| |||||| |||||||||||||    
T  21727830 gaatttaatcataaacaaggacattttagtccaaaacatacaaatatttatatacttcaattactccttaagacttgtgccaagagctaaaacatcaaaa 21727929  T
Q  263 gataaaaaatggagggagta 282  Q
    ||||||||| ||||||||||    
T  21727930 gataaaaaacggagggagta 21727949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 15233913 - 15234032
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| |||||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  15233913 gaatttaatgataaataaggacatttaagtaaaaaatatacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 15234012  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  15234013 gaaaaggaatggagggagta 15234032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 35793026 - 35792925
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||| ||||||||| |||  |||||| |||||| ||| ||||||||||||| | ||||| |||| |||||||||||||||||||||||    
T  35793026 gaatttaatgataaatcaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttatgtcaagagttaaaacatcaaaa 35792927  T
Q  263 ga 264  Q
    ||    
T  35792926 ga 35792925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 283
Target Start/End: Original strand, 41252573 - 41252694
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaa-catacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaa 261  Q
    |||||||||  ||||||||||||||| |||  |||| || |||||| ||| ||||||||||||| | ||||| |||||||||||||| ||||||||||||    
T  41252573 gaatttaatgataaataaggacatttaagtaaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaa 41252672  T
Q  262 agataaaaaatggagggagtac 283  Q
    ||| ||  ||||||| ||||||    
T  41252673 agaaaatgaatggagagagtac 41252694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 43040968 - 43040848
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||||||||||||  ||| || |||||| ||| |||| |||||||| | ||||| ||||||| ||| || |||||||||||||    
T  43040968 gaatttaatgataaataaggacattttagtaaaaatcacacaaatatttatatattttaattactccttaaaacttgtgccaatagctaaaacatcaaaa 43040869  T
Q  263 gataaaaaatggagggagtac 283  Q
    || ||  ||||||||||||||    
T  43040868 gaaaaggaatggagggagtac 43040848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 44104666 - 44104546
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaa-catacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaa 261  Q
    |||||||||  ||||||| ||||||| |||  |||| || |||||| ||| ||||||||||||| | ||||| |||| |||||| |||||||||||||||    
T  44104666 gaatttaatgataaataaagacatttaagtaaaaaaacacacaaatgtttatatactttaattactccttaaaacttatgtcaaaagttaaaacatcaaa 44104567  T
Q  262 agataaaaaatggagggagta 282  Q
    ||| ||  |||||||||||||    
T  44104566 agaaaaggaatggagggagta 44104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 271
Target Start/End: Original strand, 41643053 - 41643160
Alignment:
Q  164 aatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaag 263  Q
    ||||||||  |||||||||||||||||||  |||||| |||||| ||| ||||||||||||| |  |||| |  |||| ||||| |||||||||||||||    
T  41643053 aatttaatgataaataaggacattttagtaaaaaacacacaaatatttatatactttaattactctttaaaatgtgtgccaagaattaaaacatcaaaag 41643152  T
Q  264 ataaaaaa 271  Q
    | ||||||    
T  41643153 aaaaaaaa 41643160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 31903499 - 31903400
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||||||||| ||| |||||| ||||| | || ||||||||||||| | ||||| | | ||| ||| || |||||||||||||    
T  31903499 gaatttaatgataaataaggacattttggtcaaaaacacacaaa-tattatatactttaattactccttaaaagtcgtgccaaaagctaaaacatcaaaa 31903401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 32447948 - 32447903
Alignment:
Q  281 tacaatatattaataatttacacagtgaatattttttattctaata 326  Q
    ||||||||||||||||| || ||| |||||||||| ||||||||||    
T  32447948 tacaatatattaataatctatacaatgaatattttatattctaata 32447903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 37875845 - 37875727
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||    
T  37875845 gaatttaatgataaataaggatattttagtc-aaaacatacaaatatttctatacattaattattccttaagacttgtgccaagagctaaaacatcaaaa 37875747  T
Q  263 gataaaaaatggagggagta 282  Q
    || || ||||||||||||||    
T  37875746 gaaaagaaatggagggagta 37875727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 163 - 281
Target Start/End: Complemental strand, 1236189 - 1236071
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||| |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  1236189 gaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 1236090  T
Q  263 gataaaaaatggagggagt 281  Q
    || ||  ||||||||||||    
T  1236089 gaaaaggaatggagggagt 1236071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 283
Target Start/End: Original strand, 4055642 - 4055762
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||| ||||||| |||  |||||| |||||| ||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||    
T  4055642 gaatttaatgataaataaagacatttaagtgaaaaacacacaaatatttatatactttaattactccttaaaacttgtgtcaagagttaaaacatcaaaa 4055741  T
Q  263 gataaaaaatggagggagtac 283  Q
    || ||| || | |||||||||    
T  4055742 gaaaaagaacgaagggagtac 4055762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 49112393 - 49112282
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |  ||||||||| |   ||||  |||||||| ||||    
T  49112393 gaatttaatcataaataaggatattttagtccaaaacatacaaatatttttatactttaattactctttaagacttct---aagaactaaaacatgaaaa 49112297  T
Q  263 gataaaaaatggagg 277  Q
    |||||||||||||||    
T  49112296 gataaaaaatggagg 49112282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 47669277 - 47669396
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  47669277 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 47669376  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  47669377 gaaaaggaatggagggagta 47669396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 10737820 - 10737701
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||| |||||| ||| ||||||||||||  | ||||| |||||| ||||||| |||||||||||||    
T  10737820 gaatttaatgataaataaggacatttaagtaaaaaacacacaaatatttatatactttaattgctccttaaaacttgtatcaagagctaaaacatcaaaa 10737721  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  10737720 gaaaaggaatggagggagta 10737701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 39241310 - 39241429
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||| | ||||| ||| |||||| |||||| ||| ||||||||||||| ||||||| | || ||||||||| |||||||||||||    
T  39241310 gaatttaatgataaataagaatattttggtcaaaaacacacaaatatttatatactttaattacttcttaaaatttatgtcaagagctaaaacatcaaaa 39241409  T
Q  263 gataaaaaatggagggagta 282  Q
    || || |||||||| |||||    
T  39241410 gaaaagaaatggagagagta 39241429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 46220417 - 46220536
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||||| || |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  46220417 gaatttaatgataaataaggacaattaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 46220516  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  46220517 gaaaaggaatggagggagta 46220536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 3384714 - 3384597
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||  |||||| |||  |||||| |||||  ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  3384714 gaatttaatgataaataaaaacatttaagtaaaaaacacacaaacgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 3384615  T
Q  263 gataaaaaatggagggag 280  Q
    || ||| |||||||||||    
T  3384614 gaaaaagaatggagggag 3384597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 4817427 - 4817535
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  || ||| |||||| ||| ||||||||||||| | ||||| ||||||||||||||||||||||| ||||    
T  4817427 gaatttaatgataaataaggacatttaagtaaaacacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagttaaaacataaaaa 4817526  T
Q  263 gataaaaaa 271  Q
     | ||||||    
T  4817527 aaaaaaaaa 4817535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 163 - 279
Target Start/End: Original strand, 9831661 - 9831777
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||| |||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  9831661 gaatttaatgataaataagaacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 9831760  T
Q  263 gataaaaaatggaggga 279  Q
    || ||  ||||||||||    
T  9831761 gaaaaggaatggaggga 9831777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 48564975 - 48565094
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||| |||| | ||| ||||||||||||| | ||||| ||||||||||| ||  ||||||||||||    
T  48564975 gaatttaatgataaataaggacatttaagtaaaaaacacacaagtgtttatatactttaattactccttaaaacttgtgtcaaaagccaaaacatcaaaa 48565074  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  48565075 gaaaaggaatggagggagta 48565094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 8889600 - 8889720
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaa-catacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaa 261  Q
    |||||||||  ||||||| ||||||| |||  |||| || |||||| | | ||||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  8889600 gaatttaatgataaataatgacatttaagtaaaaaaacacacaaatgtatatatactttaattacttcttaaaacttgtgtcaagagctaaaacatcaaa 8889699  T
Q  262 agataaaaaatggagggagta 282  Q
    | | ||  |||||||||||||    
T  8889700 ataaaaggaatggagggagta 8889720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 26842598 - 26842673
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagactt 238  Q
    |||||||||| |||||||||| ||||||||| |||||||| | || ||||||||||||||||| | ||||||||||    
T  26842598 gaatttaatcataaataaggatattttagtctaaaacatatacatatttctatactttaattactccttaagactt 26842673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 18127047 - 18127107
Alignment:
Q  202 acaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  18127047 acaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 18127107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 52053850 - 52053895
Alignment:
Q  281 tacaatatattaataatttacacagtgaatattttttattctaata 326  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||    
T  52053850 tacaatatattaataatttatacaatgaatattttatattctaata 52053895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 29452661 - 29452542
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||| ||| |||||||| |||||| |||||| ||| ||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  29452661 gaatttaatgataaataatgactttttagtcaaaaacacacaaatatttatatactttaattactccttaaaacttgtgccaagagttaaaacatcaaaa 29452562  T
Q  263 gataaaaaatggagggagta 282  Q
    || || |||| |||||||||    
T  29452561 gaaaataaatagagggagta 29452542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 18742119 - 18742223
Alignment:
Q  177 ataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatggag 276  Q
    ||||||| ||||||||| |||||| |||||| ||| ||||| ||||||||| ||||||||||||| |||||| ||||||||||||||| || ||||||||    
T  18742119 ataaggatattttagtc-aaaacacacaaatatttttatacattaattattccttaagacttgtgccaagaggtaaaacatcaaaagaaaagaaatggag 18742217  T
Q  277 ggagta 282  Q
    ||||||    
T  18742218 ggagta 18742223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 2543239 - 2543358
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||| ||||||| |||  |||||| ||| || ||| ||||||||||||| ||||||| |||||||||||||| |||||||||||||    
T  2543239 gaatttaatgataaataaagacatttaagtaaaaaacacacagatgtttatatactttaattacttcttaaaacttgtgtcaagagctaaaacatcaaaa 2543338  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  2543339 gaaaacgaatggagggagta 2543358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 7156356 - 7156256
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||| ||||||||| || ||| |||||| ||| ||||||||||||||| ||||| |||||| ||||||| |||||||||||||    
T  7156356 gaatttaatgataaataaggatattttagtcaaagacacacaaatatttatatactttaattattccttaaaacttgtatcaagagctaaaacatcaaaa 7156257  T
Q  263 g 263  Q
    |    
T  7156256 g 7156256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 32274603 - 32274711
Alignment:
Q  174 taaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatg 273  Q
    |||||| |||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| ||||||||||||||| ||  ||||    
T  32274603 taaatacggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaagaaaatgaatg 32274702  T
Q  274 gagggagta 282  Q
    |||||||||    
T  32274703 gagggagta 32274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 27312235 - 27312114
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaa-catacaaatttttctatactttaattatttcttaagacttgtgtc-aagagttaaaacatcaa 260  Q
    |||||||||  ||||||||||||||| |||  |||| || |||||| ||| ||||||||||||| | ||||| ||||||||| ||||| |||||||||||    
T  27312235 gaatttaatgataaataaggacatttaagtaaaaaaacacacaaatatttatatactttaattactccttaaaacttgtgtctaagagctaaaacatcaa 27312136  T
Q  261 aagataaaaaatggagggagta 282  Q
    |||| ||  |||||||||||||    
T  27312135 aagaaaaggaatggagggagta 27312114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 786597 - 786525
Alignment:
Q  209 tttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatggagggagta 282  Q
    ||||||||||||||||||| ||||||||||||| |||||  |||| ||| ||||||||||||||| ||||||||    
T  786597 tttctatactttaattattccttaagacttgtg-caagaactaaagcattaaaagataaaaaatgaagggagta 786525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 31171109 - 31170990
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||| |||||| || |||| | |||||| ||| ||||||||||||| | ||||| | |||||  ||||  ||||| |||||||    
T  31171109 gaatttaatgataaataaggatattttaatcaaaaatacacaaatatttatatactttaattactccttaaaatttgtgctaagaactaaaatatcaaaa 31171010  T
Q  263 gataaaaaatggagggagta 282  Q
    || || ||||||||||||||    
T  31171009 gaaaagaaatggagggagta 31170990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 5008308 - 5008390
Alignment:
Q  182 gacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaaga 264  Q
    ||||||| |||  |||||| |||||| ||| ||||||||||||| | ||||| |||||||| ||||| |||||||||||||||    
T  5008308 gacatttaagtaaaaaacacacaaatatttatatactttaattactccttaaaacttgtgttaagagctaaaacatcaaaaga 5008390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 8504797 - 8504733
Alignment:
Q  218 tttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatggagggagta 282  Q
    |||||||| | ||||| |||||||||||||| ||||||||||||||| ||  |||||||||||||    
T  8504797 tttaattactccttaaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 8504733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 29875112 - 29875231
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||||| |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  29875112 gaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 29875211  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  29875212 gaaaaggaatggagggagta 29875231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 4695281 - 4695162
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| || ||||||||||    
T  4695281 gaatttaataataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctataacatcaaaa 4695182  T
Q  263 gataaaaaatggagggagta 282  Q
    || || ||||||||||||||    
T  4695181 gaaaagaaatggagggagta 4695162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 4939680 - 4939787
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||| | | ||||| ||||||||||||||||  || |||| |||||||| || ||||||||| |||||||||||||||||||||||    
T  4939680 gaatttaattataaataaaggctttttaatccaaaacatacaaatacttatatattttaattacttattaagacttatgtcaagagttaaaacatcaaaa 4939779  T
Q  263 gataaaaa 270  Q
    ||||||||    
T  4939780 gataaaaa 4939787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 12399065 - 12398945
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||| |||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  12399065 gaatttaatgataaataagaacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 12398966  T
Q  263 gataaaaaatggagggagtac 283  Q
    || ||  ||||||||||||||    
T  12398965 gaaaaggaatggagggagtac 12398945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 19574876 - 19574952
Alignment:
Q  195 aaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaa 271  Q
    |||| |||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||    
T  19574876 aaaaaatacaaatatttatatactttaattacttcttaagacttgtgccaagagttaaaacatcaaaaaataaaaaa 19574952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 22646028 - 22645909
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||||| ||||||||  |||||| |||||| ||| ||||||||||||| | ||||| ||||||| |||||| |||||||| ||||    
T  22646028 gaatttaatgataaataaggatattttagtaaaaaacacacaaatatttatatactttaattactccttaaaacttgtgccaagagctaaaacattaaaa 22645929  T
Q  263 gataaaaaatggagggagta 282  Q
    || || |||| |||||||||    
T  22645928 gaaaagaaattgagggagta 22645909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 23090456 - 23090575
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||||||| |||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  23090456 gaatttaatgataaataagaacatttaagtaaaaaatacacaaatgtttgtatactttaattactccttaaaacttgtgtcaagaggtaaaacatcaaaa 23090555  T
Q  263 gataaaaaatggagggagta 282  Q
    || ||  |||||||||||||    
T  23090556 gaaaaggaatggagggagta 23090575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 34208696 - 34208815
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  34208696 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 34208795  T
Q  263 gataaaaaatggagggagta 282  Q
     | ||  |||||||||||||    
T  34208796 aaaaaggaatggagggagta 34208815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 22528163 - 22528270
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||| |||||||  | |||||| |||||||||||||||| |||||||||||||||||   ||||| ||||||||||| | ||||||||| |||     
T  22528163 gaatttaatcataaataaaaatattttaatccaaaacatacaaatatttctatactttaatta-cgcttaaaacttgtgtcaaaaattaaaacattaaat 22528261  T
Q  263 gataaaaaa 271  Q
    |||||||||    
T  22528262 gataaaaaa 22528270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 4145852 - 4145953
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||  |||||||||||||    
T  4145852 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagaactaaaacatcaaaa 4145951  T
Q  263 ga 264  Q
    ||    
T  4145952 ga 4145953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 42757874 - 42757801
Alignment:
Q  213 tatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaagataaaaaatggagggagtacaat 286  Q
    ||||||||||||| | ||||| |||||||||||||| ||||||||||||||| ||  |||||||||||||||||    
T  42757874 tatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtacaat 42757801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 3077755 - 3077863
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||| ||||    
T  3077755 gaatttaatgataaataaggacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagctaaaacataaaaa 3077854  T
Q  263 gataaaaaa 271  Q
     | ||||||    
T  3077855 aaaaaaaaa 3077863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 12096321 - 12096214
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  |||| ||||||||||||||||| || ||||||||  || |||  |||||||| | |||||| ||||||||||||| | |||||||| ||    
T  12096321 gaatttaattataaagaaggacattttagtccataagatacaaatacttatatgatttaattactccttaagtcttgtgtcaagagct-aaacatcacaa 12096223  T
Q  263 gataaaaaa 271  Q
    |||||||||    
T  12096222 gataaaaaa 12096214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 594200 - 594124
Alignment:
Q  178 taaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaa 254  Q
    |||||| || ||||||||||||||| |||| ||| |||  |||||||| | |||||||||||||| |||||||||||    
T  594200 taaggatatcttagtccaaaacatataaatatttttatgttttaattactccttaagacttgtgttaagagttaaaa 594124  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 8384016 - 8383969
Alignment:
Q  281 tacaatatattaataatttacacagtgaatattttttattctaatatg 328  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  8384016 tacaatatattaataatttatacaatgaatattttatattctaatatg 8383969  T

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Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 271
Target Start/End: Original strand, 32144285 - 32144392
Alignment:
Q  165 atttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtc-aagagttaaaacatcaaaag 263  Q
    |||||||  |||| |||||| ||||||| | ||||||| |||| ||| ||||| ||||||| | |||||||||| | || ||||| | ||||||||||||    
T  32144285 atttaattataaacaaggactttttagttcgaaacataaaaatatttatatacgttaattactccttaagacttatatctaagagcttaaacatcaaaag 32144384  T
Q  264 ataaaaaa 271  Q
    ||||||||    
T  32144385 ataaaaaa 32144392  T

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Target: scaffold0103 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 44778 - 44877
Alignment:
Q  163 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgtcaagagttaaaacatcaaaa 262  Q
    |||||||||  ||||||||||||||| |||  ||||||  ||||| ||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  44778 gaatttaatgataaataaggacatttaagtaaaaaaca--caaatatttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 44875  T

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Target: scaffold0276 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 2092 - 2137
Alignment:
Q  281 tacaatatattaataatttacacagtgaatattttttattctaata 326  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||    
T  2092 tacaatatattaataatttatacaatgaatattttatattctaata 2137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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