View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14448_low_1 (Length: 408)
Name: NF14448_low_1
Description: NF14448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14448_low_1 |
 | |
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| [»] scaffold0295 (3 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: scaffold0295 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 7064 - 6770
Alignment:
| Q |
19 |
ctcacatgttgaagttgaaagattggcctccttctgaatcatttaaggaatgtttacctaatcattttgaggagttcgtatcttacttgccgtataaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7064 |
ctcacatgttgaagttgaaagattggcctccttctgaatcatttaaggaatgtttacctaatcattttgaggagttcgtatcttacttgccgtataaaga |
6965 |
T |
|
| Q |
119 |
atacacacatccagtaagtggttatcttaaccttgccgtgaagttgcctgatggttggctaaagccagacatggggacaaaagcatacattgcttatgga |
218 |
Q |
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|||||||||||| |||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6964 |
atacacacatcctgtaagtggttctattaaccttgccgtgaagtttcctgatggttggctaaagccagacatggggccaaaagcatacattgcttatgga |
6865 |
T |
|
| Q |
219 |
tttgctaaggagcttggatttggtgattctgtgacaaagctccattgtgacatgtcggatgcagtatgcttcaattcttgttgtctttcatgacc |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6864 |
tttgctaaggagcttggatttggtgattctgtgacaaagctccattgcgacatgtcggatgcagtatgcttcaattcttgttgtctttcatgacc |
6770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 6180 - 6135
Alignment:
| Q |
363 |
tcggcccaggcccggaaagcccgacccattttgacagctgtactca |
408 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| |||||| |
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|
| T |
6180 |
tcggcccaggcccgtaaagcccggcccattttgacagctctactca |
6135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 3695 - 3650
Alignment:
| Q |
363 |
tcggcccaggcccggaaagcccgacccattttgacagctgtactca |
408 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||| |||||| |
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|
| T |
3695 |
tcggcacaggcccgtaaagcccggcccattttgacagctctactca |
3650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 51457553 - 51457820
Alignment:
| Q |
25 |
tgttgaagttgaaagattggcctccttctgaatcatttaaggaatgtttacctaatcattttgaggagttcgtatcttacttgccgtataaagaatacac |
124 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||| ||||| ||||||| |||| || |||||| |||||| |||||| |||||||||||||| |
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| T |
51457553 |
tgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctgagttcatatcttccttgccttataaagaatacac |
51457652 |
T |
|
| Q |
125 |
acatccagtaagtggttatcttaaccttgccgtgaagttgcctgatggttggctaaagccagacatggggacaaaagcatacattgcttatggatttgct |
224 |
Q |
| |
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| |||| | ||||||| ||| |||||||| ||||||||||| ||| ||| ||||||| ||||||||| ||| | |||| |||||||||||||||||| |
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|
| T |
51457653 |
aaatccttttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcctgacatggggccaagaacatatattgcttatggatttgct |
51457752 |
T |
|
| Q |
225 |
aaggagcttggatttggtgattctgtgacaaagctccattgtgacatgtcggatgcagtatgcttcaa |
292 |
Q |
| |
|
|| | || ||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||| |
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|
| T |
51457753 |
cagaatctcggacgcggtgattctgtgactaagctccattgtgatgtgtctgatgcagtatgcttcaa |
51457820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 27 - 296
Target Start/End: Original strand, 51482199 - 51482468
Alignment:
| Q |
27 |
ttgaagttgaaagattggcctccttctgaatcatttaaggaatgtttacctaatcattttgaggagttcgtatcttacttgccgtataaagaatacacac |
126 |
Q |
| |
|
||||| ||||||||||||||||||||| | | ||||| |||| |||| ||| ||||| || |||||| |||||| |||||||||||||||||| ||| |
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|
| T |
51482199 |
ttgaaattgaaagattggcctccttctaatttatttagggaaagtttgcctcgtcattgtgctgagttcatatcttccttgccgtataaagaatatacag |
51482298 |
T |
|
| Q |
127 |
atccagtaagtggttatcttaaccttgccgtgaagttgcctgatggttggctaaagccagacatggggacaaaagcatacattgcttatggatttgctaa |
226 |
Q |
| |
|
|||| | | || |||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |||| |||||||||||||||||| | |
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|
| T |
51482299 |
atcctttcaaaggcattcttaaccttgctgtgaagttgcctgaaaatgttctaaagccagacatgggcccaaaaacatatattgcttatggatttgctca |
51482398 |
T |
|
| Q |
227 |
ggagcttggatttggtgattctgtgacaaagctccattgtgacatgtcggatgcagtatgcttcaattct |
296 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| ||| | ||||| ||||||||||| ||||||||| |
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|
| T |
51482399 |
ggagcttggacgtggtgattctgtgactaagctccactgtaatatgtctgatgcagtatgattcaattct |
51482468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 27 - 297
Target Start/End: Original strand, 51498900 - 51499170
Alignment:
| Q |
27 |
ttgaagttgaaagattggcctccttctgaatcatttaaggaatgtttacctaatcattttgaggagttcgtatcttacttgccgtataaagaatacacac |
126 |
Q |
| |
|
||||| ||||||||||||||||||||| | | |||| | ||| |||| ||| ||||| || |||||| |||||| |||||||||||||||||| ||| |
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|
| T |
51498900 |
ttgaaattgaaagattggcctccttctaacttatttgaagaaagtttgcctcgtcattgtgctgagttcatatcttccttgccgtataaagaatatacag |
51498999 |
T |
|
| Q |
127 |
atccagtaagtggttatcttaaccttgccgtgaagttgcctgatggttggctaaagccagacatggggacaaaagcatacattgcttatggatttgctaa |
226 |
Q |
| |
|
|||| | | ||| |||||||||||| || ||||||||||| | ||||||||||| ||||| ||||| |||| |||||||||||||||| | | |
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| T |
51499000 |
atcctttcaaaggtgttcttaaccttgctgtaaagttgcctgaaaatgttctaaagccagatatgggaccaaaaacatatattgcttatggatttgatca |
51499099 |
T |
|
| Q |
227 |
ggagcttggatttggtgattctgtgacaaagctccattgtgacatgtcggatgcagtatgcttcaattctt |
297 |
Q |
| |
|
||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
51499100 |
ggaacttgggcggggtgattctgtgactaagcttcattgtgatatgtctgatgcagtatgcttcaattctt |
51499170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 34 - 295
Target Start/End: Complemental strand, 30205261 - 30205000
Alignment:
| Q |
34 |
tgaaagattggcctccttctgaatcatttaaggaatgtttacctaatcattttgaggagttcgtatcttacttgccgtataaagaatacacacatccagt |
133 |
Q |
| |
|
|||||||||||||||||||| | | |||| ||||| |||| || ||||| || |||||| |||||| |||||||| |||||||| ||| |||| | |
|
|
| T |
30205261 |
tgaaagattggcctccttctaatttatttgaggaaagtttgccccgtcattgtgctgagttcatatcttccttgccgttcaaagaatatacagatccttt |
30205162 |
T |
|
| Q |
134 |
aagtggttatcttaaccttgccgtgaagttgcctgatggttggctaaagccagacatggggacaaaagcatacattgcttatggatttgctaaggagctt |
233 |
Q |
| |
|
| |||| ||| |||||||| | |||||||||| | | | || ||||||||||||| ||||| |||| |||||||||||||||||| |||||||| |
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|
| T |
30205161 |
caatggtgttctaaaccttgctgcgaagttgcctaaagatgttttacagccagacatgggcccaaaaacatatattgcttatggatttgctcaggagctt |
30205062 |
T |
|
| Q |
234 |
ggatttggtgattctgtgacaaagctccattgtgacatgtcggatgcagtatgcttcaattc |
295 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
30205061 |
gggcggggtgattctgtgactaagctccattgtgatatgtcagatgcagtatgcttcaattc |
30205000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 296
Target Start/End: Original strand, 27397543 - 27397812
Alignment:
| Q |
27 |
ttgaagttgaaagattggcctccttctgaatcatttaaggaatgtttacctaatcattttgaggagttcgtatcttacttgccgtataaagaatacacac |
126 |
Q |
| |
|
||||| ||||||||||||||||||||| || |||| | ||| ||||||| ||||| || ||||||| |||||| |||||| | ||||||||| ||| |
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|
| T |
27397543 |
ttgaaattgaaagattggcctccttctaaactatttgaagaaagtttaccgcgtcattgtgcggagttcatatcttccttgccatttaaagaatatacaa |
27397642 |
T |
|
| Q |
127 |
atccagtaagtggttatcttaaccttgccgtgaagttgcctgatggttggctaaagccagacatggggacaaaagcatacattgcttatggatttgctaa |
226 |
Q |
| |
|
|||| | | ||| ||| |||||||| |||||| ||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||| | |
|
|
| T |
27397643 |
atcctttcaaaggtgctctcaaccttgctgtgaagctgcctgatgaagttctaaagccagacatgggaccaaaaacatatattgcttatggatttgctca |
27397742 |
T |
|
| Q |
227 |
ggagcttggatttggtgattctgtgacaaagctccattgtgacatgtcggatgcagtatgcttcaattct |
296 |
Q |
| |
|
|||||||||| |||||||| ||||| | |||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
27397743 |
ggagcttggacggggtgattcagtgactaggctccattgtgatatgtctgatgcagtatgcttaaattct |
27397812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 290
Target Start/End: Original strand, 43161877 - 43162142
Alignment:
| Q |
25 |
tgttgaagttgaaagattggcctccttctgaatcatttaaggaatgtttacctaatcattttgaggagttcgtatcttacttgccgtataaagaatacac |
124 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||| ||||| |||||||| |||| || |||||| || ||| |||||| ||||||||||| || |
|
|
| T |
43161877 |
tgttgaaattgaaagattggcctccttctgatttatttcaggaacgtttacctcgtcatcatgctgagttcataacttccttgccttataaagaatatac |
43161976 |
T |
|
| Q |
125 |
acatccagtaagtggttatcttaaccttgccgtgaagttgcctgatggttggctaaagccagacatggggacaaaagcatacattgcttatggatttgct |
224 |
Q |
| |
|
| ||||| | ||||||| ||| |||||||| ||||||||||| ||| ||| ||||||| ||||||||| ||| | |||| ||||||||||||||| || |
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|
| T |
43161977 |
aaatccatttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcctgacatggggccaagaacatatattgcttatggatttcct |
43162076 |
T |
|
| Q |
225 |
aaggagcttggatttggtgattctgtgacaaagctccattgtgacatgtcggatgcagtatgcttc |
290 |
Q |
| |
|
|||| |||||| || ||||| ||||| |||||||||||| | ||| ||||||||||||||| |
|
|
| T |
43162077 |
caggatcttggacgcggggattccgtgactaagctccattgtaatgtgtttgatgcagtatgcttc |
43162142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 20867637 - 20867537
Alignment:
| Q |
196 |
caaaagcatacattgcttatggatttgctaaggagcttggatttggtgattctgtgacaaagctccattgtgacatgtcggatgcagtatgcttcaattc |
295 |
Q |
| |
|
||||| |||| ||||||||||||||| | |||||||||| |||||||||||||| ||||| |||||||| ||||| |||| |||||| |||||||| |
|
|
| T |
20867637 |
caaaaacatatattgcttatggatttcatcaggagcttgggcggggtgattctgtgactaagctacattgtgatatgtctgatgtagtatgtttcaattc |
20867538 |
T |
|
| Q |
296 |
t |
296 |
Q |
| |
|
| |
|
|
| T |
20867537 |
t |
20867537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 295
Target Start/End: Original strand, 4299621 - 4299732
Alignment:
| Q |
184 |
cagacatggggacaaaagcatacattgcttatggatttgctaaggagcttggatttggtgattctgtgacaaagctccattgtgacatgtcggatgcagt |
283 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||| || |||||||||| | ||||||||||| || |||||| ||||||| ||||| ||||||| |
|
|
| T |
4299621 |
cagacatgggcccaaaaacatatattgcttatggattttctcaggagcttgggtggggtgattctgtcactaagctctattgtgatatgtctcatgcagt |
4299720 |
T |
|
| Q |
284 |
atgcttcaattc |
295 |
Q |
| |
|
||||||| |||| |
|
|
| T |
4299721 |
atgcttcgattc |
4299732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 136285 - 136199
Alignment:
| Q |
208 |
ttgcttatggatttgctaaggagcttggatttggtgattctgtgacaaagctccattgtgacatgtcggatgcagtatgcttcaatt |
294 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||| |||||||||||||||||||| ||||| |||| |||||| ||||||| |
|
|
| T |
136285 |
ttgcttatggattttctgaggagcttgggcggggtgattccgtgacaaagctccattgtgatatgtctgatgtagtatgtttcaatt |
136199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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