View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14449_high_2 (Length: 457)
Name: NF14449_high_2
Description: NF14449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14449_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 130 - 424
Target Start/End: Complemental strand, 37319845 - 37319551
Alignment:
| Q |
130 |
cactgtctagaacacactagtccaagtgagcaacaaggtgtgttttagaaaaattattctgagttttacttcaggatttcttttactttatttcttttct |
229 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37319845 |
cactgtctagaacacactagtccaagtgagcaactaggtttgttttagaaaatttattctgagttttacttcaggatttcttttactttatttcttttct |
37319746 |
T |
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| Q |
230 |
aagatttcaataccctatttaaatatgtccataacaaattttacttgtaactgtattcatattattgatcaatcaggatagctatttttagaatttcata |
329 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
37319745 |
aagatttcaatatcctatttaaatatgtccataacaaattttacttgtaaccgtattcatattattgatcaatcagcattgctatttttagaatttcata |
37319646 |
T |
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| Q |
330 |
gatttctgtaatgaagtaatatattttaattttctacaacaaatctatcatttgtctcttattttgtcaaataatgaaataattgcacacaggtt |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37319645 |
gatttctgtaatgaagtaatatattttaattttctacaacaaatctatcatttgtctcttattttgtcaaataatgaaataattgcacacaggtt |
37319551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 37320098 - 37319983
Alignment:
| Q |
15 |
gttaatgtcatagactttgtggttggtaaaggaaagggaaaggagacactgacttgataaaggtaatatgtgtggatagcattaaacaaaaaagaaaggg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320098 |
gttaatgtcatagactttgtggttggtaaaggaaagggaaaggagacactgacttgataaaggtaatatgtgtggatagcattaaacaaaaaagaaaggg |
37319999 |
T |
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| Q |
115 |
aatcattttttgtttc |
130 |
Q |
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|||||||||||||||| |
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| T |
37319998 |
aatcattttttgtttc |
37319983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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