View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1444_high_14 (Length: 238)

Name: NF1444_high_14
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1444_high_14
NF1444_high_14
[»] chr2 (17 HSPs)
chr2 (131-222)||(35341833-35341924)
chr2 (8-78)||(35341752-35341822)
chr2 (100-222)||(35347245-35347371)
chr2 (96-199)||(21437067-21437168)
chr2 (96-216)||(5187922-5188043)
chr2 (121-209)||(41959721-41959809)
chr2 (120-209)||(1130793-1130879)
chr2 (101-216)||(18704737-18704852)
chr2 (101-222)||(83585-83706)
chr2 (98-209)||(9298783-9298895)
chr2 (149-209)||(10221556-10221616)
chr2 (96-150)||(7401129-7401183)
chr2 (118-191)||(27882490-27882564)
chr2 (96-145)||(17200684-17200733)
chr2 (96-156)||(14201537-14201597)
chr2 (25-61)||(35347154-35347190)
chr2 (96-156)||(41437446-41437506)
[»] chr8 (13 HSPs)
chr8 (96-216)||(15175226-15175347)
chr8 (96-216)||(43120738-43120859)
chr8 (98-221)||(14636669-14636789)
chr8 (149-216)||(26600886-26600953)
chr8 (144-219)||(32350848-32350923)
chr8 (144-219)||(32367509-32367584)
chr8 (96-140)||(28452052-28452096)
chr8 (96-222)||(26916238-26916364)
chr8 (96-201)||(35170832-35170937)
chr8 (120-204)||(31447212-31447296)
chr8 (117-196)||(10839673-10839752)
chr8 (96-162)||(35059341-35059411)
chr8 (117-201)||(4606267-4606351)
[»] chr7 (7 HSPs)
chr7 (96-217)||(38582250-38582371)
chr7 (96-216)||(34595944-34596064)
chr7 (96-200)||(32438163-32438267)
chr7 (97-209)||(3839292-3839402)
chr7 (96-201)||(16960089-16960193)
chr7 (118-199)||(30548835-30548916)
chr7 (118-162)||(32711369-32711412)
[»] chr1 (14 HSPs)
chr1 (77-196)||(4080388-4080506)
chr1 (96-201)||(27458307-27458413)
chr1 (96-216)||(31165668-31165789)
chr1 (99-216)||(15183795-15183913)
chr1 (96-216)||(31065124-31065245)
chr1 (117-209)||(23532837-23532929)
chr1 (98-201)||(51062118-51062226)
chr1 (120-216)||(14578478-14578575)
chr1 (98-203)||(48497014-48497119)
chr1 (98-203)||(37126565-37126662)
chr1 (180-222)||(2765644-2765686)
chr1 (96-192)||(42242006-42242099)
chr1 (176-209)||(46798399-46798432)
chr1 (96-140)||(47763164-47763208)
[»] chr4 (12 HSPs)
chr4 (96-201)||(56094298-56094404)
chr4 (117-222)||(26644989-26645094)
chr4 (96-216)||(42679242-42679362)
chr4 (104-203)||(22097149-22097248)
chr4 (149-209)||(867530-867590)
chr4 (96-204)||(18521267-18521376)
chr4 (133-198)||(23441568-23441632)
chr4 (96-201)||(48827645-48827749)
chr4 (120-201)||(51983388-51983469)
chr4 (96-140)||(6419987-6420031)
chr4 (117-209)||(47312132-47312224)
chr4 (102-190)||(51906065-51906153)
[»] chr3 (10 HSPs)
chr3 (107-206)||(28552636-28552735)
chr3 (96-216)||(8795715-8795836)
chr3 (96-216)||(16194255-16194376)
chr3 (96-195)||(36260853-36260948)
chr3 (100-201)||(43369819-43369920)
chr3 (176-222)||(2757287-2757333)
chr3 (96-209)||(29306221-29306335)
chr3 (120-200)||(33282710-33282791)
chr3 (97-159)||(44108107-44108169)
chr3 (98-147)||(17549777-17549826)
[»] chr6 (3 HSPs)
chr6 (96-209)||(2391390-2391503)
chr6 (124-209)||(23888215-23888297)
chr6 (101-209)||(35029863-35029971)
[»] chr5 (6 HSPs)
chr5 (77-213)||(5552505-5552644)
chr5 (178-216)||(33401530-33401568)
chr5 (96-162)||(932643-932708)
chr5 (102-147)||(5474007-5474052)
chr5 (96-140)||(34367198-34367242)
chr5 (95-209)||(36267957-36268068)
[»] scaffold0001 (1 HSPs)
scaffold0001 (177-216)||(508128-508167)


Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 35341833 - 35341924
Alignment:
Q  131 tttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcatttttagacctatcacct 222  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35341833 tttaaaattatgtttgagttcaaaaacaataacatgaaaatatggataagtaatcatgtttgatgtcataagcatttttagacctatcacct 35341924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 35341752 - 35341822
Alignment:
Q  8 gtgtggacttttaataataggttggtaggtctaaatttaccgttctcaaaattaagatttataagtgtgtt 78  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  35341752 gtgtggacttttaataataggttggtaggtctaaattcaccgttctcaaatttaagatttataagtgtgtt 35341822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 35347245 - 35347371
Alignment:
Q  100 gatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatggg----taagtaatcatgtttgatg 195  Q
    |||||||||  ||| |||||||||||||||||||||| ||| | |||| |||||||||||||| |||||||| | ||    |||||||||||||||||||    
T  35347245 gatttataacattgctaatgaaatatttatctttaaatttaggcttgaattcaaaaacaagaaaatgaaaatgttggtaattaagtaatcatgtttgatg 35347344  T
Q  196 tcataagcatttttagacctatcacct 222  Q
    |||||||||||||||||| || |||||    
T  35347345 tcataagcatttttagacttaccacct 35347371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 21437067 - 21437168
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    |||||||||||||||||| | || |||||||||||| |||||||| ||| || |||||||| ||||| |  ||||||||  |||||||||||||||||||    
T  21437067 acttgatttataatgttgttgatcaaatatttatctgtaaaattaggttggaattcaaaaataagaaga--aaaatatgtataagtaatcatgtttgatg 21437164  T
Q  196 tcat 199  Q
    ||||    
T  21437165 tcat 21437168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 5187922 - 5188043
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgag-ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||| ||||||||| ||| | || |||||||||| | |||||||| ||||||  || ||||||||||||| |||||| ||  ||| ||||||||||||||    
T  5187922 acttaatttataatattgttcatcaaatatttatatgtaaaattaggtttgaaatttaaaaacaagaacaagaaaatgtgtataaataatcatgtttgat 5188021  T
Q  195 gtcataagcatttttagaccta 216  Q
    ||||||| || |||| ||||||    
T  5188022 gtcataaacacttttggaccta 5188043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 41959809 - 41959721
Alignment:
Q  121 aatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcattttt 209  Q
    ||||||||||| |||| ||| |||||| |||||||||||||| | |||||| || || ||||||||| |||||| ||||| ||||||||    
T  41959809 aatatttatctgtaaacttaggtttgaattcaaaaacaagaagaggaaaatgtgagtgagtaatcatatttgatatcatatgcattttt 41959721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 1130793 - 1130879
Alignment:
Q  120 aaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcattttt 209  Q
    |||||||||||| |||||||| | |||| |||||||||||||||   ||||| || ||||| |||||||||| |||||||||||| ||||    
T  1130793 aaatatttatctgtaaaattaggcttgaattcaaaaacaagaac---aaaatgtgcgtaagaaatcatgttttatgtcataagcactttt 1130879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 18704737 - 18704852
Alignment:
Q  101 atttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcata 200  Q
    ||||||||| ||| | || |||||||||||| |||||||| | |||| ||||||| |||||| |  || |||||  |||||||| ||||||| |||||||    
T  18704737 atttataatattgttgataaaatatttatctgtaaaattaggcttgaattcaaaagcaagaagaaaaatatatgcataagtaattatgtttgttgtcata 18704836  T
Q  201 agcatttttagaccta 216  Q
    |||| |||| ||||||    
T  18704837 agcacttttggaccta 18704852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 83706 - 83585
Alignment:
Q  101 atttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcata 200  Q
    ||||||||||||| | |||||| |||||||| ||||||||   |||| ||||| |||| ||| | |||||| ||  |||| |||||||||||||| ||||    
T  83706 atttataatgttgttgatgaaaaatttatctgtaaaattagacttgaattcaataacatgaagaagaaaatgtgcataagcaatcatgtttgatgacata 83607  T
Q  201 agcatttttagacctatcacct 222  Q
    | || |||| |||||| |||||    
T  83606 aacacttttggacctaccacct 83585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 9298783 - 9298895
Alignment:
Q  98 ttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagtt-caaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgt 196  Q
    |||||||||||| ||| | || |||||||||| | |||||||| | ||||  | |||||||||||| | |||||| ||  |||||||||||| |||||||    
T  9298783 ttgatttataatattgttgatcaaatatttatatgtaaaattaagcttgaaatacaaaaacaagaagaagaaaatgtgtataagtaatcatgattgatgt 9298882  T
Q  197 cataagcattttt 209  Q
    |||||||| ||||    
T  9298883 cataagcactttt 9298895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 10221616 - 10221556
Alignment:
Q  149 ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcattttt 209  Q
    |||||||| ||||| | |||||| ||  |||||||||||||||||| ||||||||||||||    
T  10221616 ttcaaaaataagaagaagaaaatgtgtataagtaatcatgtttgatatcataagcattttt 10221556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 7401183 - 7401129
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagtt 150  Q
    |||||||||||||| ||| | |||||||||||||| ||||||||||  |||||||    
T  7401183 acttgatttataattttgttgatgaaatatttatcgttaaaattattattgagtt 7401129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 27882564 - 27882490
Alignment:
Q  118 tgaaatatttatctttaaaattatgtttgagttc-aaaaacaagaacatgaaaatatgggtaagtaatcatgttt 191  Q
    |||||||||||||| |||||||| |||||| ||| ||||| ||||| | |||||| || |||| |||||||||||    
T  27882564 tgaaatatttatctgtaaaattaagtttgaattcgaaaaagaagaagaagaaaatgtgtgtaattaatcatgttt 27882490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 17200733 - 17200684
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgttt 145  Q
    |||||||||||||| ||| | |||||||||||||| ||||||||| ||||    
T  17200733 acttgatttataatattgttgatgaaatatttatccttaaaattaggttt 17200684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 14201537 - 14201597
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaa 156  Q
    |||||||||||||||||| | || ||||||||||  ||||||||| |||||  ||||||||    
T  14201537 acttgatttataatgttgttgataaaatatttattattaaaattaggtttggattcaaaaa 14201597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 35347154 - 35347190
Alignment:
Q  25 taggttggtaggtctaaatttaccgttctcaaaatta 61  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  35347154 taggttggtaggtccaaattcaccgttctcaaaatta 35347190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 41437446 - 41437506
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaa 156  Q
    |||| ||||||||||||| | ||||||||||||| | |||||||| |||||| || |||||    
T  41437446 acttaatttataatgttgttgatgaaatatttatttataaaattaagtttgaattaaaaaa 41437506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 15175226 - 15175347
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgag-ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||| ||| | || |||||||||| | ||| |||| ||||||  |||||||||||||| | |||||| || |||||||||||||||||||    
T  15175226 acttgatttataatattgttgatcaaatatttatatgtaatattaggtttgaaattcaaaaacaagaagaagaaaatgtgtgtaagtaatcatgtttgat 15175325  T
Q  195 gtcataagcatttttagaccta 216  Q
    ||||||||||||||| ||||||    
T  15175326 gtcataagcatttttggaccta 15175347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 43120738 - 43120859
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgag-ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||| ||| | || |||||||||| | |||||||| ||||||  |||||||||||||| | |||||| ||  ||||||||||||||||||    
T  43120738 acttgatttataatattgttgattaaatatttatatgtaaaattaggtttgaaattcaaaaacaagaagaagaaaatgtgtataagtaatcatgtttgat 43120837  T
Q  195 gtcataagcatttttagaccta 216  Q
     ||||||||| |||| ||||||    
T  43120838 atcataagcacttttggaccta 43120859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 14636789 - 14636669
Alignment:
Q  98 ttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtc 197  Q
    |||||||||||| ||| | ||||||||||||| | |||||||| | |||| ||||||||||||||   ||||||    |||| |||||||||||||||||    
T  14636789 ttgatttataatattgctgatgaaatatttatttgtaaaattaagcttgaattcaaaaacaagaa---gaaaatgcatgtaactaatcatgtttgatgtc 14636693  T
Q  198 ataagcatttttagacctatcacc 221  Q
    ||||| |||||| | |||||||||    
T  14636692 ataagtatttttgggcctatcacc 14636669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 26600953 - 26600886
Alignment:
Q  149 ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcatttttagaccta 216  Q
    |||||||||||||| | |||||| ||  |||||||||||||||||||||||||||| |||| ||||||    
T  26600953 ttcaaaaacaagaagaagaaaatgtgtataagtaatcatgtttgatgtcataagcacttttggaccta 26600886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 32350923 - 32350848
Alignment:
Q  144 ttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcatttttagacctatca 219  Q
    |||| |||||||| ||||| | |||||| ||  ||||||||||||||||||||||||| || ||||||||||||||    
T  32350923 ttgaattcaaaaataagaagaagaaaatgtgtataagtaatcatgtttgatgtcataaacacttttagacctatca 32350848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 32367584 - 32367509
Alignment:
Q  144 ttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcatttttagacctatca 219  Q
    |||| |||||||| ||||| | |||||| ||  ||||||||||||||||||||||||| || ||||||||||||||    
T  32367584 ttgaattcaaaaataagaagaagaaaatgtgtataagtaatcatgtttgatgtcataaacacttttagacctatca 32367509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 28452096 - 28452052
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaatta 140  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  28452096 acttgatttataatattgttaatgaaatatttatctttaaaatta 28452052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 26916238 - 26916364
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    ||||||||||||||  |  | ||||||||||||| | ||||||||   || | |||||||| ||||| | ||||||||| || |||||||||| ||||||    
T  26916238 acttgatttataatactattgatgaaatatttatttataaaattaaacttaaattcaaaaataagaagaagaaaatatgcgttagtaatcatggttgatg 26916337  T
Q  196 tcataagcatttttagacctatcacct 222  Q
    |||||| || ||||  ||||| |||||    
T  26916338 tcataaacacttttgaacctaccacct 26916364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 35170937 - 35170832
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    |||| ||||||||| ||| | || |||||||||||| ||| |||| | |||| |||||||| | ||| | |||||| ||  ||||||||||| |||||||    
T  35170937 acttaatttataatattgtttatcaaatatttatctctaatattaggcttgatttcaaaaatacgaagaagaaaatgtgtataagtaatcatctttgatg 35170838  T
Q  196 tcataa 201  Q
    ||||||    
T  35170837 tcataa 35170832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 31447212 - 31447296
Alignment:
Q  120 aaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagca 204  Q
    ||||| |||||| |||||||| | |||| |||||||| ||||| |  ||||| ||   |||||||||||||||||||||||||||    
T  31447212 aaataattatctgtaaaattaggcttgaattcaaaaataagaagagtaaaatgtgtacaagtaatcatgtttgatgtcataagca 31447296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 10839752 - 10839673
Alignment:
Q  117 atgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgt 196  Q
    ||||||||||||| | |||||| |   |||| |||||||||||||| | |||||| || ||| |||||||||||||||||    
T  10839752 atgaaatatttatatgtaaaatcaaacttgaattcaaaaacaagaagaagaaaatgtgcgtaggtaatcatgtttgatgt 10839673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 35059411 - 35059341
Alignment:
Q  96 acttgatttataatgttggtaatgaaat----atttatctttaaaattatgtttgagttcaaaaacaagaa 162  Q
    |||| ||||||||||||| |||||||||    |||||||| |||| |||||||||| |||| |||||||||    
T  35059411 acttaatttataatgttgttaatgaaatattaatttatctataaagttatgtttgaattcataaacaagaa 35059341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 4606267 - 4606351
Alignment:
Q  117 atgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataa 201  Q
    |||||||| ||| || |||||||||| |||| || ||||||||||| |  ||||||||  |||| ||| || |||||||||||||    
T  4606267 atgaaatacttacctgtaaaattatgcttgaattaaaaaacaagaagaaaaaaatatgcataaggaattatatttgatgtcataa 4606351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 38582250 - 38582371
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    |||| ||||||||| ||| | || ||||||||||||||||||||| | |||| |||||||||||||| | |||||| ||  |||||||||||||| ||||    
T  38582250 acttaatttataatattgtttataaaatatttatctttaaaattaggcttgaattcaaaaacaagaaaaagaaaatgtgtctaagtaatcatgttagatg 38582349  T
Q  196 tcataagcatttttagacctat 217  Q
    |||||| ||||||| |||||||    
T  38582350 tcataaacatttttggacctat 38582371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 34596064 - 34595944
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    |||||||||||||||||| | || ||||||||||||||||||||| | |||| |||||||| ||||| | |||||| ||  ||||||||||| |||||||    
T  34596064 acttgatttataatgttgttgatcaaatatttatctttaaaattaagcttgaattcaaaaataagaagaagaaaatgtgtataagtaatcatatttgatg 34595965  T
Q  196 tcataagcatttttagaccta 216  Q
    |||||| || |||| ||||||    
T  34595964 tcataaacacttttggaccta 34595944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 32438163 - 32438267
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    ||||||||||||  || | ||||||||||||||||| ||||||||   |||| ||||||||||| || |||||||| || || |||||| ||||||||||    
T  32438163 acttgatttataccgtagttaatgaaatatttatctgtaaaattagacttgaattcaaaaacaacaagatgaaaatgtgtgtgagtaataatgtttgatg 32438262  T
Q  196 tcata 200  Q
    |||||    
T  32438263 tcata 32438267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 3839292 - 3839402
Alignment:
Q  97 cttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaa-aacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    ||||||||||||||||| | ||||||||||| ||| |||||||| | | || |||||| ||||||||   |||||  || ||||||||| ||||||| ||    
T  3839292 cttgatttataatgttgttgatgaaatatttttctgtaaaattaggctcgacttcaaacaacaagaa---gaaaacgtgtgtaagtaattatgtttggtg 3839388  T
Q  196 tcataagcattttt 209  Q
    | ||||||| ||||    
T  3839389 ttataagcactttt 3839402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 16960193 - 16960089
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    |||||||||||||||||| | |||||| ||||||  | ||||||||| |||| || | |||||| ||   ||||||||| ||| |||||||| ||||||     
T  16960193 acttgatttataatgttgttcatgaaacatttat-gtgaaaattatgattgaatttagaaacaaaaaggagaaaatatgtgtaggtaatcatctttgata 16960095  T
Q  196 tcataa 201  Q
    ||||||    
T  16960094 tcataa 16960089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 30548916 - 30548835
Alignment:
Q  118 tgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcat 199  Q
    ||||||||||||   | |||||||||| || ||||||||||||||   |||| |||| ||||||| ||||||||||| ||||    
T  30548916 tgaaatatttataagtgaaattatgttagaattcaaaaacaagaaggagaaattatgtgtaagtagtcatgtttgatatcat 30548835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 32711369 - 32711412
Alignment:
Q  118 tgaaatatttatctttaaaattatgtttgagttcaaaaacaagaa 162  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||    
T  32711369 tgaaatatttatcttaaaaattaagtttgagtt-aaaaacaagaa 32711412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 4080388 - 4080506
Alignment:
Q  77 ttgaaagaaaattaatcga--acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatg 174  Q
    |||||| |||||| |||||  ||||||||| |||| ||| ||||||||||||||||| |||||||||| || | ||||||||||||||   |||||||||    
T  4080388 ttgaaacaaaattgatcgattacttgatttgtaatattgttaatgaaatatttatctgtaaaattatgcttaaattcaaaaacaagaa---gaaaatatg 4080484  T
Q  175 ggtaagtaatcatgtttgatgt 196  Q
     |||| ||||||||||||||||    
T  4080485 agtaactaatcatgtttgatgt 4080506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 27458413 - 27458307
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgag-ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||| ||| | || |||||||||| | |||||||||||||||  || ||||||||||| | |||||| ||  ||||||||||||||||||    
T  27458413 acttgatttataatattgttgatcaaatatttatatgtaaaattatgtttgaaattaaaaaacaagaagaagaaaatgtgtataagtaatcatgtttgat 27458314  T
Q  195 gtcataa 201  Q
    |||||||    
T  27458313 gtcataa 27458307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 31165789 - 31165668
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgag-ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||| ||| | |  |||||||||| | |||||||| | ||||  |||||||||||||| | |||||| ||  ||||||||||||||||||    
T  31165789 acttgatttataatattgttgaacaaatatttatatgtaaaattaagcttgaaattcaaaaacaagaagaagaaaatgtgtataagtaatcatgtttgat 31165690  T
Q  195 gtcataagcatttttagaccta 216  Q
    |||||||||| |||| ||||||    
T  31165689 gtcataagcacttttggaccta 31165668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 15183795 - 15183913
Alignment:
Q  99 tgatttataatgttggtaatgaaatatttatctttaaaattatgtttgag-ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtc 197  Q
    ||||||||||| | | | || |||||||||| | |||||||| ||||||  ||||||||||| || | |||||| || | ||||||||||||||||||||    
T  15183795 tgatttataatatcgttgatcaaatatttatatgtaaaattaggtttgaaattcaaaaacaacaagaagaaaatgtgcgcaagtaatcatgtttgatgtc 15183894  T
Q  198 ataagcatttttagaccta 216  Q
    ||||||| |||| ||||||    
T  15183895 ataagcacttttggaccta 15183913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 31065124 - 31065245
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgag-ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||| | | | || |||||||||| | |||||||| | ||||  |||| ||||||||| |  ||||| ||  ||||||||||||||||||    
T  31065124 acttgatttataatatcgttgataaaatatttatatgtaaaattaggcttgaaattcagaaacaagaagaaaaaaatgtgtataagtaatcatgtttgat 31065223  T
Q  195 gtcataagcatttttagaccta 216  Q
     |||||||||||||| ||||||    
T  31065224 atcataagcatttttggaccta 31065245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 23532837 - 23532929
Alignment:
Q  117 atgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcattttt 209  Q
    ||||||||||||||| |||||||| | || | || |||||||| || | |||||| |  ||||||||| ||||||| ||||||||||||||||    
T  23532837 atgaaatatttatctataaaattaagattaaattgaaaaacaataagaagaaaatgtatgtaagtaattatgtttggtgtcataagcattttt 23532929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 51062226 - 51062118
Alignment:
Q  98 ttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaa-----gtaatcatgtttg 192  Q
    |||||||||||||||| | | ||||||||||| | |||||||| | |||| || |||||| | |||||||||||||  ||||     |||||||||||||    
T  51062226 ttgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataacatgaaaatatatgtaagttatgtaatcatgtttg 51062127  T
Q  193 atgtcataa 201  Q
    |||||||||    
T  51062126 atgtcataa 51062118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 14578575 - 14578478
Alignment:
Q  120 aaatatttatctttaaaattatg-tttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcatttttagaccta 216  Q
    |||||||||| | |||||||| | ||| | || ||||||||||| |  ||||| ||  |||||||||||||||||||||||||||  |||||||||||    
T  14578575 aaatatttatatgtaaaattaggctttaaattaaaaaacaagaagaaaaaaatgtgtataagtaatcatgtttgatgtcataagcccttttagaccta 14578478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 48497119 - 48497014
Alignment:
Q  98 ttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtc 197  Q
    ||||||||||| |||| | || ||||||| |||| |||||||| | |||| ||||||||||| || |  ||||| || |||||||||| | |||||| ||    
T  48497119 ttgatttataaagttgttgataaaatattcatctctaaaattaagcttgaattcaaaaacaataagaataaaatttgtgtaagtaatcctatttgatatc 48497020  T
Q  198 ataagc 203  Q
    ||||||    
T  48497019 ataagc 48497014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 37126565 - 37126662
Alignment:
Q  98 ttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtc 197  Q
    |||||||||||| ||| ||||||||||||  ||| |||||||||| | |||||      |||||||| |||||  || ||||||||||||||||||||||    
T  37126565 ttgatttataatattgttaatgaaatatt--tctataaaattatgctcgagtt------caagaacaagaaaacgtgagtaagtaatcatgtttgatgtc 37126656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 2765644 - 2765686
Alignment:
Q  180 gtaatcatgtttgatgtcataagcatttttagacctatcacct 222  Q
    ||||| |||||||||||||||||||||||| || |||||||||    
T  2765644 gtaataatgtttgatgtcataagcatttttggatctatcacct 2765686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 42242006 - 42242099
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttg 192  Q
    |||||||||||||| ||| | ||||||| ||||||  |||||||||| |||  ||||||||||  || | ||||||||| ||||||||| |||||||    
T  42242006 acttgatttataatattgttgatgaaatgtttatc-gtaaaattatgcttgcattcaaaaaca--aagaagaaaatatgcgtaagtaatgatgtttg 42242099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 46798399 - 46798432
Alignment:
Q  176 gtaagtaatcatgtttgatgtcataagcattttt 209  Q
    |||||||||||||||||||||||||| |||||||    
T  46798399 gtaagtaatcatgtttgatgtcataaacattttt 46798432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 47763164 - 47763208
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaatta 140  Q
    |||||||||||||||||| | ||||||| ||||||| ||||||||    
T  47763164 acttgatttataatgttgctgatgaaatgtttatctgtaaaatta 47763208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 56094298 - 56094404
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatg-aaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||||||| | || |||||||||||| |||||||| | || | |||||||| ||||| | | ||||| ||  ||||||||||||||||||    
T  56094298 acttgatttataatgttgttgatcaaatatttatctgtaaaattaggcttaaattcaaaaataagaagaagaaaaatgtgtataagtaatcatgtttgat 56094397  T
Q  195 gtcataa 201  Q
    |||||||    
T  56094398 gtcataa 56094404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 26644989 - 26645094
Alignment:
Q  117 atgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcatttttagaccta 216  Q
    ||||||||||||||  ||||||||   |||| ||||||||||| |  | ||||||||| | |||||||||||||||||||| |||| | |||||||| ||    
T  26644989 atgaaatatttatcggtaaaattagacttgaattcaaaaacaaaaggaagaaaatatgtgcaagtaatcatgtttgatgtcgtaagaacttttagactta 26645088  T
Q  217 tcacct 222  Q
    ||||||    
T  26645089 tcacct 26645094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 42679362 - 42679242
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    ||||||||||||| ||||   || |||||||||||| |||||||| | |||| |||||||| || || |  ||||||||  || ||||||||||||||||    
T  42679362 acttgatttataacgttgtcgatcaaatatttatctgtaaaattaggcttgaattcaaaaataataagaaaaaaatatgtatacgtaatcatgtttgatg 42679263  T
Q  196 tcataagcatttttagaccta 216  Q
    | |||| || |||| ||||||    
T  42679262 ttataaacacttttggaccta 42679242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 22097248 - 22097149
Alignment:
Q  104 tataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagc 203  Q
    |||||| ||| | ||||||||||||||||||||||||   |||| ||||||| |||||| |  ||||| || ||||||||||| | ||||||||| ||||    
T  22097248 tataatattgttgatgaaatatttatctttaaaattagtcttgaattcaaaaccaagaagaaaaaaatttgcgtaagtaatcaaggttgatgtcacaagc 22097149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 867590 - 867530
Alignment:
Q  149 ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcattttt 209  Q
    |||||||||||||| | |||||| |   |||||||||||||||||||||||||| ||||||    
T  867590 ttcaaaaacaagaagaggaaaatgtttataagtaatcatgtttgatgtcataagtattttt 867530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 18521376 - 18521267
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaa-catgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||| ||| | ||| ||||||||| | |||||||| | |||| |||||||| |||||  || ||||| || ||||| |  ||||||||||    
T  18521376 acttgatttataatattgttgatggaatatttatttgtaaaattaggcttgaattcaaaaataagaagaataaaaatgtgtgtaagcatacatgtttgat 18521277  T
Q  195 gtcataagca 204  Q
    ||| ||||||    
T  18521276 gtcgtaagca 18521267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 23441632 - 23441568
Alignment:
Q  133 taaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtca 198  Q
    |||||||| | |||| ||||||||||| |  | ||||||||| |||||||||||||||||||||||    
T  23441632 taaaattaagattgaattcaaaaacaa-aggaagaaaatatgcgtaagtaatcatgtttgatgtca 23441568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 48827645 - 48827749
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    |||||||||||||| |||   |||||||||| || | |||||||||  |||| || ||||||||||| |  ||||| ||  |||||||||||| ||||||    
T  48827645 acttgatttataatattgtagatgaaatattaatttgtaaaattatacttgaatttaaaaacaagaagaataaaatgtgcataagtaatcatg-ttgatg 48827743  T
Q  196 tcataa 201  Q
    ||||||    
T  48827744 tcataa 48827749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 51983469 - 51983388
Alignment:
Q  120 aaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataa 201  Q
    |||||||||||| |||||||| |||||| |||||||||  ||| |  ||||| ||  ||||||| ||| |||||||||||||    
T  51983469 aaatatttatctgtaaaattaagtttgaattcaaaaacttgaagaacaaaatgtgcataagtaaccatatttgatgtcataa 51983388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 6420031 - 6419987
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaatta 140  Q
    |||| ||||||||||||| |||| |||||||||||| ||||||||    
T  6420031 acttaatttataatgttgctaataaaatatttatctctaaaatta 6419987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 47312224 - 47312132
Alignment:
Q  117 atgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcattttt 209  Q
    ||||||||||||||| |||||| | | |||| |||||||||||||| | |||||| |    ||| ||||| ||||||||| |||| |||||||    
T  47312224 atgaaatatttatctgtaaaatcaagcttgaattcaaaaacaagaagaagaaaatgtacacaagcaatcacgtttgatgttataaacattttt 47312132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 51906153 - 51906065
Alignment:
Q  102 tttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtt 190  Q
    |||||||||||| | ||||||||||||||  || |||||   || | ||||||||| |||| | |||||| || |||||||||||||||    
T  51906153 tttataatgttgttgatgaaatatttatcggtacaattagacttaaattcaaaaactagaagaagaaaatgtgtgtaagtaatcatgtt 51906065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 28552735 - 28552636
Alignment:
Q  107 aatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcatt 206  Q
    ||||||| | ||||||||||||||| ||||| || |||| | ||  |||||||||| | ||||| ||| ||||||||||| ||||| |||||||||||||    
T  28552735 aatgttgcttatgaaatatttatctataaaaataggttttaatttgaaaacaagaaaaagaaaacatgtgtaagtaatcaagtttggtgtcataagcatt 28552636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 8795715 - 8795836
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttg-agttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||| ||| | || |||||||||| | |||||||||||||| | ||||||||||| || | |||||| ||  ||| ||||||||  ||||    
T  8795715 acttgatttataatattgttgatcaaatatttatatgtaaaattatgtttgaaattcaaaaacaataagaagaaaatgtgtataaataatcatgcatgat 8795814  T
Q  195 gtcataagcatttttagaccta 216  Q
    |||||||| | |||| ||||||    
T  8795815 gtcataagtacttttggaccta 8795836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 16194255 - 16194376
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgag-ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||| ||| | || |||||||||| | |||||||| | ||||  ||||||||||| || | |||||| ||  | |||||||| |||||||    
T  16194255 acttgatttataatattgttgatcaaatatttatatgtaaaattaggcttgaaattcaaaaacaaaaagaagaaaatgtgtatgagtaatcacgtttgat 16194354  T
Q  195 gtcataagcatttttagaccta 216  Q
    |||||||||| |||| ||||||    
T  16194355 gtcataagcacttttggaccta 16194376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 36260948 - 36260853
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatg 195  Q
    |||||||||||||| ||| | | ||||||||||||  |||||||| |||||| ||||||||||||   |||||||| || |||| |||||||||||||||    
T  36260948 acttgatttataatattgttgaagaaatatttatccgtaaaattaagtttgaattcaaaaacaag---atgaaaatgtgagtaa-taatcatgtttgatg 36260853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 43369920 - 43369819
Alignment:
Q  100 gatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcat 199  Q
    |||||||||| ||| | || |||||||||| | |||||||||| |||| |||||||| || || | ||| || ||  |||||||||||||||||||||||    
T  43369920 gatttataattttgttgattaaatatttatttgtaaaattatgcttgaattcaaaaataataagaagaatatgtgtataagtaatcatgtttgatgtcat 43369821  T
Q  200 aa 201  Q
    ||    
T  43369820 aa 43369819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 2757333 - 2757287
Alignment:
Q  176 gtaagtaatcatgtttgatgtcataagcatttttagacctatcacct 222  Q
    |||||||| |||||||||| |||||||||||||||||||| ||||||    
T  2757333 gtaagtaaccatgtttgatatcataagcatttttagacctctcacct 2757287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 29306335 - 29306221
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgag-ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||| | | | || |||||||||| | |||||||  | ||||  |||||||||||||| | |||||| ||  |||||||| |||||||||    
T  29306335 acttgatttataatatggttgatcaaatatttatatgtaaaatttggcttgaaattcaaaaacaagaagaagaaaatgtgtataagtaataatgtttgat 29306236  T
Q  195 gtcataagcattttt 209  Q
    |||||||||| ||||    
T  29306235 gtcataagcactttt 29306221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 33282791 - 33282710
Alignment:
Q  120 aaatatttatctttaaaattatgtttgagttca-aaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcata 200  Q
    |||||||||| | |||||||||||||||  | | |||||||||| | |||||| |  |||||||||||||||||||||||||    
T  33282791 aaatatttatttgtaaaattatgtttgaaattacaaaacaagaagaagaaaatgtatgtaagtaatcatgtttgatgtcata 33282710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 44108169 - 44108107
Alignment:
Q  97 cttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaa 159  Q
    ||||||||||||||||| | || |||||||||| | |||||||| |||||| ||| |||||||    
T  44108169 cttgatttataatgttgttcataaaatatttatgtgtaaaattaagtttgaattcgaaaacaa 44108107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 17549777 - 17549826
Alignment:
Q  98 ttgatttataatgttggtaatgaaatatttatctttaaaattatgtttga 147  Q
    |||||||| ||||||| | ||||||||||||||| |||||||||| ||||    
T  17549777 ttgatttacaatgttgatgatgaaatatttatctgtaaaattatgattga 17549826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 2391503 - 2391390
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgag-ttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    |||||||||||||| ||| | || || ||||||| | |||||||| ||||||  ||||||||||| |||| |||||| ||  ||||||||||| ||||||    
T  2391503 acttgatttataatattgttgattaa-tatttatatgtaaaattaggtttgaaattcaaaaacaaaaacaagaaaatgtgtataagtaatcatatttgat 2391405  T
Q  195 gtcataagcattttt 209  Q
    |||||||||| ||||    
T  2391404 gtcataagcactttt 2391390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 23888215 - 23888297
Alignment:
Q  124 atttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcataagcattttt 209  Q
    |||||| | |||| ||| |||||| ||| ||||||||||   ||||| ||| ||||||||||||||||| ||||||||||| ||||    
T  23888215 atttatatgtaaatttaggtttgaattcgaaaacaagaa---gaaaacatgcgtaagtaatcatgtttggtgtcataagcactttt 23888297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 35029971 - 35029863
Alignment:
Q  101 atttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgatgtcata 200  Q
    |||||||| |||| | ||||||||||||||| ||||||||   |||| || |||||||| || | ||| || |  ||||||||| || ||||||| ||||    
T  35029971 atttataacgttgttgatgaaatatttatctgtaaaattaatattgaattgaaaaacaataaaaagaagatgtatgtaagtaataatatttgatgccata 35029872  T
Q  201 agcattttt 209  Q
    | |||||||    
T  35029871 aacattttt 35029863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 5552505 - 5552644
Alignment:
Q  77 ttgaaagaaaattaatcga--acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatg 174  Q
    |||||| ||||||||||||  |||| ||||||||| ||| | || ||| ||||||| ||||||||| |||||| ||  |||| |||||   ||||||||     
T  5552505 ttgaaacaaaattaatcgattacttaatttataatattgttcattaaacatttatcgttaaaattaagtttgaattagaaaataagaaggagaaaatatt 5552604  T
Q  175 ggtaagtaatcatgtttgatgtcataagca-tttttagac 213  Q
     |||| |||||||||||| |||||||| || |||||||||    
T  5552605 tgtaattaatcatgtttgttgtcataaacactttttagac 5552644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 33401568 - 33401530
Alignment:
Q  178 aagtaatcatgtttgatgtcataagcatttttagaccta 216  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  33401568 aagtaatcatgtttgatgtcataagcatttttggaccta 33401530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 932643 - 932708
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaa 162  Q
    |||||||||||||| ||| | ||||||||||||||| ||||||||  ||||| || |||||||||||    
T  932643 acttgatttataatattgttgatgaaatatttatctgtaaaattagctttgaatt-aaaaacaagaa 932708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 5474052 - 5474007
Alignment:
Q  102 tttataatgttggtaatgaaatatttatctttaaaattatgtttga 147  Q
    |||||||| ||  ||||||||||||||||||||||||||| |||||    
T  5474052 tttataatattattaatgaaatatttatctttaaaattatatttga 5474007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 34367198 - 34367242
Alignment:
Q  96 acttgatttataatgttggtaatgaaatatttatctttaaaatta 140  Q
    |||||||||| ||||||| | ||||||||||||||| ||||||||    
T  34367198 acttgatttaaaatgttgttgatgaaatatttatctctaaaatta 34367242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 36267957 - 36268068
Alignment:
Q  95 aacttgatttataatgttggtaatgaaatatttatctttaaaattatgtttgagttcaaaaacaagaacatgaaaatatgggtaagtaatcatgtttgat 194  Q
    ||||||||| |||||  || | || ||||| |||| | ||||||||||||||| ||||||||||||||   |||||||   |||||||||||| ||| ||    
T  36267957 aacttgattaataatagtgttgattaaatacttatttgtaaaattatgtttgaattcaaaaacaagaa---gaaaataaatgtaagtaatcatatttaat 36268053  T
Q  195 gtcataagcattttt 209  Q
     ||| ||||| ||||    
T  36268054 atcacaagcactttt 36268068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 508167 - 508128
Alignment:
Q  177 taagtaatcatgtttgatgtcataagcatttttagaccta 216  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  508167 taagtaatcatgtttgatgtcataaacatttttggaccta 508128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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