View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1444_high_6 (Length: 416)
Name: NF1444_high_6
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1444_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 33631517 - 33631130
Alignment:
| Q |
13 |
gagatggggcttcagtttcaggtaaggctacctatcttcattaaaccaccttaaattcacttaaatgcaaacttgaatatataccaaattaaaacaaaat |
112 |
Q |
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| T |
33631517 |
gagatggggcttcagtttcaggtaaggctacctatcttcattaaaccaccttaaattcacttaaatgcaaacttgaatatataccaaattaaaacaaaat |
33631418 |
T |
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| Q |
113 |
tgctttcttgatcatccttttttcttcattctcatcgacaggtttgtccagttaaatgcccccaacccaccttgccttccatcatttatgttcccaccct |
212 |
Q |
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| T |
33631417 |
tgatttcttgatcatccttttttcttcattctcatcgacaggtttgtccagttaaatgcccccaacccaccttgccttccatcatttatgttcccaccct |
33631318 |
T |
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| Q |
213 |
tcttttccatttcaatcacttctaagtgtactagaatctgtcagattttatttttctgtacaataatctgtcaaaatctacaaagctcaaatccacactt |
312 |
Q |
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| T |
33631317 |
tcttttccatttcaatcacttctaagtgtactagaatctgtcagattttatttttctgtacaataatctgtcaaaatctacaaagctcaaatccacactt |
33631218 |
T |
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| Q |
313 |
atttctcttcctcccacatctaccatcactatgcactaaacactactattatggagaaggggttgaccagtaaaaatgagcacaatgt |
400 |
Q |
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| T |
33631217 |
atttctcttcctcccacatctaccatcactatgcactaaacactactattatggagaagggtttgaccagtaaaaatgagcacaatgt |
33631130 |
T |
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