View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1444_high_8 (Length: 288)
Name: NF1444_high_8
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1444_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 102 - 278
Target Start/End: Complemental strand, 29147544 - 29147365
Alignment:
| Q |
102 |
atgaaaaatgagaggagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgt |
201 |
Q |
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| T |
29147544 |
atgaaaaatgggaggagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgcgagttttgt |
29147445 |
T |
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| Q |
202 |
gtgctgcaacagcactaatctcagcagaatggtgactatgatgatgatg---atgaccaatataaaattccttccctttg |
278 |
Q |
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| T |
29147444 |
gtgctgcaacagcactaatctcagcagaatggtgactatgatgatgatgatgatgaccaatataaaattccttccctttg |
29147365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 116 - 278
Target Start/End: Original strand, 29224151 - 29224322
Alignment:
| Q |
116 |
gagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgtgtgctgcaacagca |
215 |
Q |
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| T |
29224151 |
gagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgtgtgctgcaacagca |
29224250 |
T |
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| Q |
216 |
ctaatctcagcagaatggtgact---------atgatgatgatgatgaccaatataaaattccttccctttg |
278 |
Q |
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| T |
29224251 |
ctaatctcagcagaatggtgactatgatgatgatgatgatgatgatgaccaatataaaattccttccctttg |
29224322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 29224074 - 29224135
Alignment:
| Q |
16 |
tatataagagttaagccgaaagaaatcagaatcatctcattcaagtgttcttgacaatcaat |
77 |
Q |
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| T |
29224074 |
tatataagagttaagccgaaagaaatcagaatcatctcattcaagtgttcttggcaatcaat |
29224135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 38851808 - 38851867
Alignment:
| Q |
154 |
agcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgtgtgctgcaacag |
213 |
Q |
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| T |
38851808 |
agcatgctccaatcaaaaacaaagtcccacgaagcatttgtgttttgtgagctgcaacag |
38851867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 5303850 - 5304006
Alignment:
| Q |
119 |
acatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgtgtgctgcaacagcacta |
218 |
Q |
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| T |
5303850 |
acatacttgcagaataaaccaagctgtgtaaaagcaacatgatccaaccaaaaagaaagttccacgaagcatatgagttttatgtgctacaacagaaata |
5303949 |
T |
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| Q |
219 |
atctcagcagaatggtgactatgatgatgatgatgaccaatataaaattccttccctttg |
278 |
Q |
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| T |
5303950 |
acccctgcagaatgggaact---atgatgatgaggaccaatataaaattccttccctttg |
5304006 |
T |
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