View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1444_low_12 (Length: 248)
Name: NF1444_low_12
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1444_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15724445 - 15724676
Alignment:
| Q |
1 |
tcatagttttctacaatctaaaccttaaaaggaatccaaattaacaagtcaaatatgaaatattacctggatttggcacaggagaa---gatcctgtatt |
97 |
Q |
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| T |
15724445 |
tcatagttttctacaatctaaaccttgaaaggaatccaaattaccaagtcaaatatgaaatattacctggatttggcacaggagaagaagatcctgtatt |
15724544 |
T |
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| Q |
98 |
ctcagctaactgatagaacatttgatcatcaaatctaatcccacaacttggagctacaagagcccatgttaccttagtcccacaacacagacgaattttg |
197 |
Q |
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| T |
15724545 |
ctcagttaactgatagaacaattgatcatcaaatctaatcccacaacttggagctacaagagcccatgttaccttagtcccacaacacagatgaattttg |
15724644 |
T |
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| Q |
198 |
tcgaacaatgtctccaaacactctgtgcaccc |
229 |
Q |
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| T |
15724645 |
tcgaacaatgtctccaaacactctgtgcaccc |
15724676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 15705669 - 15705750
Alignment:
| Q |
104 |
taactgatagaacatttgatcatcaaatctaatcccacaacttggagctacaagagcccatgttaccttagtcccacaacac |
185 |
Q |
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||||||| |||| ||||||||||||| | ||||||||||||||| |||||| |||||| ||||| |||||||||||| |
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| T |
15705669 |
taactgaaggaacttttgatcatcaaacttgatcccacaacttggaactacaacttcccatgcaacctttgtcccacaacac |
15705750 |
T |
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