View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1444_low_14 (Length: 242)
Name: NF1444_low_14
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1444_low_14 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 2258065 - 2258246
Alignment:
| Q |
61 |
atatatataaacatacacactttcacagttacacatatgtagaataatattctgattaacaccatggcaacagtcgagcaaataacctgctttcttgttt |
160 |
Q |
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| T |
2258065 |
atatatataaacatacacactttcacagttacacatatgtagaataacattctgattaacaccatggcaacagtcgagcaaataacctgctttcttgttt |
2258164 |
T |
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| Q |
161 |
ctttgttcctattatgctcactaacaagttcaaaacgctatgatgtaagcttatacttctatttctctttctatttattatc |
242 |
Q |
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| T |
2258165 |
ctttgttcctattatgctcactaacatgttcaaaacgctatgatgtaagcttatacttctatttctctttctatttattatc |
2258246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 2257392 - 2257486
Alignment:
| Q |
19 |
agggagtattatatcacaaaataaatatgcatttccgcatacatatatataaacatacacactttcacagttacacatatgtagaataatattctgatt |
117 |
Q |
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| T |
2257392 |
agggagtattatatctcaaaataaatatgcatttcc----tcatatatataaacacacccactttcacagttacacatattttgaataacatcctgatt |
2257486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 2257973 - 2258023
Alignment:
| Q |
19 |
agggagtattatatcacaaaataaatatgcatttccgcatacatatatata |
69 |
Q |
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| T |
2257973 |
agggagtagtatatcacaaaataaatatgcatttccgcatacatatatata |
2258023 |
T |
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