View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1444_low_17 (Length: 235)

Name: NF1444_low_17
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1444_low_17
NF1444_low_17
[»] chr6 (4 HSPs)
chr6 (1-203)||(25195920-25196122)
chr6 (107-151)||(33141805-33141849)
chr6 (17-84)||(46218-46285)
chr6 (104-144)||(18690622-18690662)
[»] chr8 (2 HSPs)
chr8 (10-84)||(32927973-32928047)
chr8 (10-84)||(26100076-26100150)
[»] chr5 (1 HSPs)
chr5 (104-151)||(38592173-38592220)
[»] chr4 (2 HSPs)
chr4 (19-70)||(20712758-20712809)
chr4 (107-158)||(29728938-29728989)
[»] chr1 (3 HSPs)
chr1 (107-151)||(32088671-32088715)
chr1 (10-83)||(7524194-7524267)
chr1 (1-34)||(52059398-52059431)
[»] chr7 (2 HSPs)
chr7 (107-149)||(12306679-12306721)
chr7 (10-70)||(45557446-45557506)
[»] chr2 (1 HSPs)
chr2 (107-156)||(1101941-1101990)
[»] chr3 (1 HSPs)
chr3 (107-151)||(2410028-2410072)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 25195920 - 25196122
Alignment:
Q  1 tcaactcacttacataaatgtatccaaacacaaacaactttgccctcaactcatttttagttggaatcaaatttacagaatcaaacatacaaataatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195920 tcaactcacttacataaatgtatccaaacacaaacaactttgccctcaactcatttttagttggaatcaaatttacagaatcaaacatacaaataatcaa 25196019  T
Q  101 tactagaatcaattctacttgagagcaaccaaacctatcaaaataaattttggctcctgaatgtgaaactgaacataaatgatataactaacttcataag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25196020 tactagaatcaattctacttgagagcaaccaaacctatcaaaataaattttggctcctgaatgtgaaactgaacataaatgatataactaacttcataag 25196119  T
Q  201 aac 203  Q
    |||    
T  25196120 aac 25196122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 33141805 - 33141849
Alignment:
Q  107 aatcaattctacttgagagcaaccaaacctatcaaaataaatttt 151  Q
    |||||||| ||||||||||||||||||| ||||||||| ||||||    
T  33141805 aatcaattatacttgagagcaaccaaacatatcaaaatcaatttt 33141849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 46285 - 46218
Alignment:
Q  17 aatgtatccaaacacaaacaactttgccctcaactcatttttagttggaatcaaatttacagaatcaa 84  Q
    |||||||||||||||||| ||||||     ||||||| |||||||| ||||||| |||||||||||||    
T  46285 aatgtatccaaacacaaataactttaattgcaactcacttttagttagaatcaattttacagaatcaa 46218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 18690662 - 18690622
Alignment:
Q  104 tagaatcaattctacttgagagcaaccaaacctatcaaaat 144  Q
    ||||||||||||||||||| ||||||||||| | |||||||    
T  18690662 tagaatcaattctacttgaaagcaaccaaacatgtcaaaat 18690622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 32927973 - 32928047
Alignment:
Q  10 ttacataaatgtatccaaacacaaacaactttgccctcaactcatttttagttggaatcaaatttacagaatcaa 84  Q
    |||||| ||||||||||||||||||  |||||||| |||||||| |||||||  ||||||| |||||| ||||||    
T  32927973 ttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaattttacataatcaa 32928047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 26100150 - 26100076
Alignment:
Q  10 ttacataaatgtatccaaacacaaacaactttgccctcaactcatttttagttggaatcaaatttacagaatcaa 84  Q
    ||||||||||| ||||||||||||| | |||| || ||||||| ||||||||  ||||||| |||||| ||||||    
T  26100150 ttacataaatgcatccaaacacaaatagctttaccttcaactcgtttttagtcagaatcaattttacataatcaa 26100076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 38592220 - 38592173
Alignment:
Q  104 tagaatcaattctacttgagagcaaccaaacctatcaaaataaatttt 151  Q
    ||||||||||||||||||||||||||||||| |||||| || ||||||    
T  38592220 tagaatcaattctacttgagagcaaccaaacatatcaatatcaatttt 38592173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 20712809 - 20712758
Alignment:
Q  19 tgtatccaaacacaaacaactttgccctcaactcatttttagttggaatcaa 70  Q
    |||||||||||||||| |||||| || |||||||||||||||| ||||||||    
T  20712809 tgtatccaaacacaaataactttaccttcaactcatttttagtcggaatcaa 20712758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 29728989 - 29728938
Alignment:
Q  107 aatcaattctacttgagagcaaccaaacctatcaaaataaattttggctcct 158  Q
    ||||||||||||| |||||||||||||| | ||||||| |||||||| ||||    
T  29728989 aatcaattctactcgagagcaaccaaacttgtcaaaatcaattttggatcct 29728938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 32088671 - 32088715
Alignment:
Q  107 aatcaattctacttgagagcaaccaaacctatcaaaataaatttt 151  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||    
T  32088671 aatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 32088715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 7524194 - 7524267
Alignment:
Q  10 ttacataaatgtatccaaacacaaacaactttgccctcaactcatttttagttggaatcaaatttacagaatca 83  Q
    |||||||||||| ||||||||||||  ||||| || | | |||| |||||||| ||||||| |||| |||||||    
T  7524194 ttacataaatgtgtccaaacacaaatcactttaccttgagctcacttttagttagaatcaattttatagaatca 7524267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 52059398 - 52059431
Alignment:
Q  1 tcaactcacttacataaatgtatccaaacacaaa 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  52059398 tcaactcacttacataaatgtattcaaacacaaa 52059431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 12306721 - 12306679
Alignment:
Q  107 aatcaattctacttgagagcaaccaaacctatcaaaataaatt 149  Q
    |||||||||||||||||||||||||||| | ||||||| ||||    
T  12306721 aatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 12306679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 45557446 - 45557506
Alignment:
Q  10 ttacataaatgtatccaaacacaaacaactttgccctcaactcatttttagttggaatcaa 70  Q
    |||||| ||||||||||||||||||  ||||| || |||||||| |||||||  |||||||    
T  45557446 ttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaa 45557506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 1101990 - 1101941
Alignment:
Q  107 aatcaattctacttgagagcaaccaaacctatcaaaataaattttggctc 156  Q
    ||||||||||||| ||| |||||||||  | |||||||||||||||||||    
T  1101990 aatcaattctactcgagtgcaaccaaaaatttcaaaataaattttggctc 1101941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 2410028 - 2410072
Alignment:
Q  107 aatcaattctacttgagagcaaccaaacctatcaaaataaatttt 151  Q
    |||||||||||||||||| || |||||| | ||||||||||||||    
T  2410028 aatcaattctacttgagaacatccaaacatgtcaaaataaatttt 2410072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University