View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1444_low_2 (Length: 528)
Name: NF1444_low_2
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1444_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 57 - 511
Target Start/End: Original strand, 2570644 - 2571103
Alignment:
| Q |
57 |
gagttgctaggtaccaacctccactgaaagagaaaccatcaccaacagaaataggagcatccagaagataatcatcctgcagcattggaaacaaagtatc |
156 |
Q |
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| T |
2570644 |
gagttgctaggtaccaacctccactgaaagagaaaccatcaccaacagaaataggagcatccagaagataatcatcctgcagcattggaaacaaagtatc |
2570743 |
T |
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| Q |
157 |
aagaggtaaagctgataaatacaagccattaacactaagacacaaactttgtctccatttgaagtactacagttcagcttcagtgtcttccttgaaggga |
256 |
Q |
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| T |
2570744 |
aagaggtaaagctgataaatacaagccattaacactaagacacaaactttgtctccatttgaagtactacagttcagcttcagtgtcttccttgaaggga |
2570843 |
T |
|
| Q |
257 |
aacgctttgtggaacaagattgaaggtgagaatggaagtaacaagaagaagaagcatgaaaagcttgaatggtcattgcatgaaagaagaagcagtggtt |
356 |
Q |
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| T |
2570844 |
aacgctttgtggaacaagattgaaggtgagaatggaagtaacaagaagaagaagcatgaaaagcttgaatggtcattgcatgaaagaagaagcagtggtt |
2570943 |
T |
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| Q |
357 |
ggatagtgaagagggaaa-----aaagtagcttaagagctaacagaacagaaaaaccgttagttagtacttttgatgccaacttaggaaggaaaagaaac |
451 |
Q |
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| T |
2570944 |
ggatagtgaagagggaaaaaagtaaagtagcttaagagctaacagaacagaaaaaccgttagttagtacttttgatgccaacttaggaaggaaaagaaac |
2571043 |
T |
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| Q |
452 |
atatgatgttttttgtccatttggaatggatagggattctctggtctcaaaattgcttac |
511 |
Q |
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| T |
2571044 |
atatgatgttttttgtccatttggaatggatagggattctctggtctcaaaattgcttac |
2571103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2570600 - 2570637
Alignment:
| Q |
1 |
attacagaaaagtactttatccaacaaatatatgatcc |
38 |
Q |
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| T |
2570600 |
attacagaaaagtactttatccaacaaatctatgatcc |
2570637 |
T |
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