View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1444_low_3 (Length: 449)

Name: NF1444_low_3
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1444_low_3
NF1444_low_3
[»] chr3 (7 HSPs)
chr3 (141-376)||(33631735-33631947)
chr3 (3-84)||(33631599-33631680)
chr3 (268-376)||(17057142-17057250)
chr3 (375-439)||(33632162-33632226)
chr3 (375-439)||(17057468-17057532)
chr3 (228-265)||(33632536-33632573)
chr3 (229-313)||(34936715-34936799)
[»] chr7 (1 HSPs)
chr7 (254-371)||(43492947-43493063)
[»] chr5 (2 HSPs)
chr5 (278-334)||(43378621-43378677)
chr5 (278-334)||(43379448-43379504)
[»] chr6 (1 HSPs)
chr6 (278-328)||(13207395-13207445)
[»] chr1 (2 HSPs)
chr1 (226-309)||(15668268-15668351)
chr1 (221-250)||(7338846-7338875)
[»] chr2 (1 HSPs)
chr2 (19-83)||(15873839-15873904)
[»] chr8 (2 HSPs)
chr8 (278-328)||(28584354-28584404)
chr8 (229-309)||(41889323-41889403)
[»] scaffold0151 (1 HSPs)
scaffold0151 (281-334)||(20792-20845)


Alignment Details
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 141 - 376
Target Start/End: Original strand, 33631735 - 33631947
Alignment:
Q  141 cggaagtatcggttaacatgactctttctattgacgtgcactaataattttttgttaattagtcttgcatggttcccttaaaaaatatgagtccatcttt 240  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  33631735 cggaggtatcggttaacatgactctttctattgaggtgcactaataattttttgttaattagtcttgcatggttcccttaaaaaatatgagtccatc--- 33631831  T
Q  241 gctccatttaacaatactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttgnnnnnn 340  Q
                       ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||          
T  33631832 -------------------tatttagacctgttcacttcttagatgtgtgacacatggcaaaaatgaaactaacgattgagataaaaatgtttg-gaaaa 33631911  T
Q  341 nncacttgtttattgaataaaaaatcaacattcgcg 376  Q
      |||||||||| |||||||||||||||||||||||    
T  33631912 aacacttgtttactgaataaaaaatcaacattcgcg 33631947  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 33631599 - 33631680
Alignment:
Q  3 ggtgttcttgatgcattagtttaagaaacaaatataataagaatattttgaaacttacgtaatcaaatgcttaaaagtgtag 84  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33631599 ggtgttcttgatgcattagtttaagaaacaaatataataagaattttttgaaacttacgtaatcaaatgcttaaaagtgtag 33631680  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 268 - 376
Target Start/End: Original strand, 17057142 - 17057250
Alignment:
Q  268 cctgtacacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttgnnnnnnnncacttgtttattgaat-aaaaaatc 366  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||| ||||| ||||||||    
T  17057142 cctgttcacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaaggtttg-gaaaaaacacttgtttactgaataaaaaaatc 17057240  T
Q  367 aacattcgcg 376  Q
    ||||||||||    
T  17057241 aacattcgcg 17057250  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 33632162 - 33632226
Alignment:
Q  375 cgatcttctttctcttgttgttggatatgtgttgttccactcttcaatttcactcttgatctgtg 439  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  33632162 cgatcttctttctcttgttgttggatctgtgttgttgcactcttcaatttcactcttgatctgtg 33632226  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 17057468 - 17057532
Alignment:
Q  375 cgatcttctttctcttgttgttggatatgtgttgttccactcttcaatttcactcttgatctgtg 439  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||    
T  17057468 cgatcttctttctcttgttgttggatctgtgttgttccactcttcaatttcactctcgttctgtg 17057532  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 33632573 - 33632536
Alignment:
Q  228 tgagtccatctttgctccatttaacaatactctattta 265  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  33632573 tgagtccatctttgctccatttaataatactccattta 33632536  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 34936715 - 34936799
Alignment:
Q  229 gagtccatctttgctccatttaacaatactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaaccaa 313  Q
    |||| ||||||||||||||||| ||   ||| |||||  ||| | |||||| ||||| ||||||| ||||||||||| |||||||    
T  34936715 gagtgcatctttgctccatttaccatacctccatttatcccttttcacttcatagatttgtgacatgtggcaaaaataaaaccaa 34936799  T

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Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 254 - 371
Target Start/End: Complemental strand, 43493063 - 43492947
Alignment:
Q  254 atactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttgnnnnnnnncacttgtttat 353  Q
    |||||| |||||  ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||        ||||||||||     
T  43493063 atactccatttacccctgttcacttcttagatgtgtgacacatggcaaaaatgaaaccaacggttgagattaaaaggtttg-gaaaaaacacttgtttac 43492965  T
Q  354 tgaataaaaaatcaacat 371  Q
    ||||||||||||||||||    
T  43492964 tgaataaaaaatcaacat 43492947  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 43378621 - 43378677
Alignment:
Q  278 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttg 334  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||    
T  43378621 tcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaaggtttg 43378677  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 43379504 - 43379448
Alignment:
Q  278 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttg 334  Q
    |||||||||||||||| ||||||||||| ||| ||| ||||| |||||||| |||||    
T  43379504 tcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaaggtttg 43379448  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 13207395 - 13207445
Alignment:
Q  278 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaa 328  Q
    |||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  13207395 tcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 15668351 - 15668268
Alignment:
Q  226 tatgagtccatctttgctccatttaacaatactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaa 309  Q
    |||||||||||||||||||||||||| ||  ||| |||||  ||| | ||||  || ||||||||||| |||||||||||||||    
T  15668351 tatgagtccatctttgctccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaa 15668268  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 250
Target Start/End: Complemental strand, 7338875 - 7338846
Alignment:
Q  221 aaaaatatgagtccatctttgctccattta 250  Q
    ||||||||||||||||||||||||||||||    
T  7338875 aaaaatatgagtccatctttgctccattta 7338846  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 15873904 - 15873839
Alignment:
Q  19 tagtttaagaaacaaatataataagaatattttgaaacttacgtaatc-aaatgcttaaaagtgta 83  Q
    ||||| |||||||||||||||||||||| | |||||||||  |||||| |||| ||||||||||||    
T  15873904 tagttaaagaaacaaatataataagaatttcttgaaacttgtgtaatcaaaatacttaaaagtgta 15873839  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 28584404 - 28584354
Alignment:
Q  278 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaa 328  Q
    |||||||| ||||||||||||||||||| ||||||| ||  ||||||||||    
T  28584404 tcttagatatgtgacacgtggcaaaaataaaaccaagggccgagattaaaa 28584354  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 41889323 - 41889403
Alignment:
Q  229 gagtccatctttgctccatttaacaatactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaa 309  Q
    ||||||||||||| ||||||||| ||  ||| |||||  ||| | ||||  || ||||||||||| |||||||||||||||    
T  41889323 gagtccatctttgttccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaa 41889403  T

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Target: scaffold0151 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 20792 - 20845
Alignment:
Q  281 tagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttg 334  Q
    ||||||||||||| |||| |||||| ||||||| || ||||||||||| |||||    
T  20792 tagatgtgtgacatgtggtaaaaataaaaccaatggctgagattaaaaggtttg 20845  T

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