View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1444_low_4 (Length: 419)
Name: NF1444_low_4
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1444_low_4 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 45784783 - 45785175
Alignment:
| Q |
11 |
cataggttcttggataagtggacattgcttcacacctaagaaacaaaattaaaccattcattaattttgatcaaattaaacaatgcaaaaatggaatatt |
110 |
Q |
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| T |
45784783 |
cataggttcttggataagtggacattgcttcacacctaagaaacaaaattaaaccattcattaattttgatcaaattaaacaatgcacaaatggaatatt |
45784882 |
T |
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| Q |
111 |
atttaattgtgctaaccaatcatgatatgttccaatcagtcccctttcatatattgccccaagggtgtcaaccttagcctggacaggaaccacattcata |
210 |
Q |
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| T |
45784883 |
att-aattgtgctaaccaatcatgatatgttccaatcagtcccctttcatatattgccccaagggtgtcaaccttagcctggacaggaaccacattcata |
45784981 |
T |
|
| Q |
211 |
acccaaacaggatttttaactaaagcagatgcaaatccacccaagttagcattcatatccagaaggttacgatatctcttggttccaagctgattgttca |
310 |
Q |
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| T |
45784982 |
acccaaacaggattcttaactaaagcagatgcaaatccacccaagttagcattcatatccacaaggttacgatatctcttggttccaagctgattgttca |
45785081 |
T |
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| Q |
311 |
cttttttgtaatgtggaatccttttcttccaaagctcgttatcttttgaataaccttcagaagttaccccttcaatagtacccatgtgaatcct |
404 |
Q |
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| T |
45785082 |
cttttttgtaatgtggaatccttttcttccaaagctcgttatcttttgaataaccttcagaagttaccccttcaatagtacccatgtgaatcct |
45785175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 101739 - 101595
Alignment:
| Q |
127 |
caatcatgatatgttccaatcagtcccctttcatatattgccccaagggtgtcaaccttagcctggacaggaaccacattcataacccaaacaggatttt |
226 |
Q |
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| T |
101739 |
caatcatggtatcatccaatcaatcccctttcatatattgctcgaagagtatcaaccttaacctcgacaagaaccacgttcataacccaaacaggattct |
101640 |
T |
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| Q |
227 |
taactaaagcagatgcaaatccacccaagttagcattcatatcca |
271 |
Q |
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| T |
101639 |
taatcaaagcagatgcaaatccaccatagctagcattcatatcca |
101595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 266
Target Start/End: Original strand, 64220 - 64361
Alignment:
| Q |
125 |
accaatcatgatatgttccaatcagtcccctttcatatattgccccaagggtgtcaaccttagcctggacaggaaccacattcataacccaaacaggatt |
224 |
Q |
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| T |
64220 |
accaattatgatacattccaatcaaccctctttcatatattgctccaagtgtatcaactttagcttgaataggaacaacattcataacccaaataggata |
64319 |
T |
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| Q |
225 |
tttaactaaagcagatgcaaatccacccaagttagcattcat |
266 |
Q |
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| T |
64320 |
tttaacaagtgaagctgcaaatccacccaaataagcattcat |
64361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 10281461 - 10281577
Alignment:
| Q |
156 |
ttcatatattgccccaagggtgtcaaccttagcctggacaggaaccacattc----ataacccaaacaggatttttaactaaagcagatgcaaatccacc |
251 |
Q |
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| T |
10281461 |
ttcatatattgctccaagtgtatcaaccttagcatggacaggaaccacgttcatatataacccaaacatggttcttaatcaaagcaaatgcaaatccacc |
10281560 |
T |
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| Q |
252 |
caagttagcattcatat |
268 |
Q |
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| T |
10281561 |
gtagttagcattcatat |
10281577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 503625 - 503700
Alignment:
| Q |
196 |
ggaaccacattcataacccaaacaggatttttaactaaagcagatgcaaatccacccaagttagcattcatatcca |
271 |
Q |
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| T |
503625 |
ggaacaacattcataacccaaactggatatttcaccaatgcagctgcaaatccaccaaagccagcattcatatcca |
503700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 28637799 - 28637835
Alignment:
| Q |
11 |
cataggttcttggataagtggacattgcttcacacct |
47 |
Q |
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| T |
28637799 |
cataggttctaggataagtggacatggcttcacacct |
28637835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 14109 - 14173
Alignment:
| Q |
80 |
atcaaattaaacaatgcaaaaatggaatattatttaattgtgctaaccaatcatgatatgttccaatca |
148 |
Q |
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| T |
14109 |
atcaaattaaacaaggcacaaatggaata----gtaattgtgctaaccaatcatgatatgttccaatca |
14173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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