View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1444_low_5 (Length: 417)
Name: NF1444_low_5
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1444_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 256148 - 256307
Alignment:
| Q |
13 |
cagacggggaaattaagttcgattattagtgtaaaaattcattnnnnnnngattattttcttaagtgcaactcaaacgataaaaggtagaggaaaataag |
112 |
Q |
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| T |
256148 |
cagacggggaaattaagttcgattattagtgtaaaaattcattaaaaaaagattattttcttaagtgcaactcaatcgataaaaggtagaggaaaataag |
256247 |
T |
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| Q |
113 |
ttcaattattagtgtaagaattcattaaaaaatcaaatataaaaatataatattggaaac |
172 |
Q |
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| T |
256248 |
ttcaattattagtgtaagaattcattaaaaaatcaaatataaaaatataatactggaaac |
256307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 270 - 381
Target Start/End: Original strand, 256405 - 256517
Alignment:
| Q |
270 |
tagaaattcaccttttccaaggtaaataagtgtgg-tgtcagggttcaaccctaacctctgtatatcatgcgatgttgatatcaacttaactaaggtcat |
368 |
Q |
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||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
256405 |
tagaaattcacttttttcaaggtaaataagtgtgggtgtcagggttcaaccctaacctctgtatatcatgcgatgttcatatcaacttaactaaggtcat |
256504 |
T |
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| Q |
369 |
gatgacttttatc |
381 |
Q |
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| T |
256505 |
gatgacttttatc |
256517 |
T |
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