View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1444_low_8 (Length: 303)
Name: NF1444_low_8
Description: NF1444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1444_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 18933956 - 18934237
Alignment:
| Q |
16 |
cactaacatacttagactcatcacttcccaagtatagagcagcttcagccacatcttttggcacaagattagcaccctttaggttagaataaacatctag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18933956 |
cactaacatacttagactcatcacttcccaagtatagagcagcttcagccacatcttttggcacaagattagcaccctttaggttagaataaacatctaa |
18934055 |
T |
|
| Q |
116 |
aacatcatcatcatcatcgagcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagc |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18934056 |
aacatcatcatcatcatcgagcttaaaatatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagc |
18934155 |
T |
|
| Q |
216 |
tcgatggccgtgttcctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgcttc |
297 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18934156 |
tcgatggccgtgtttctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgcttc |
18934237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 18946144 - 18946419
Alignment:
| Q |
16 |
cactaacatacttagactcatcacttcccaagtatagagcagcttcagccacatcttttggcacaagattagcaccctttaggttagaataaacatctag |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18946144 |
cactaacatatttagactcatcacttcccaaatacaaagcagcttcagccacatcttttggcaaaagattagcaccctttaggttagaataaacatctag |
18946243 |
T |
|
| Q |
116 |
aacatcatcatcatcatcgagcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagc |
215 |
Q |
| |
|
||| ||||||||||| ||||||||| | |||||| ||||||||||| | |||| ||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
18946244 |
aactccatcatcatca---agcttaaagaaattcttagccaacggagttccgacaacataaggtgacacacaattcactcgaataccgtacggtccaagc |
18946340 |
T |
|
| Q |
216 |
tcgatggccgtgttcctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgc |
294 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
18946341 |
tcgatggccgtatttttcattagcccaacaacggcgtgctttgaacttgtgtaggcatgtgaagccacaccacctatgc |
18946419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 18929285 - 18929563
Alignment:
| Q |
16 |
cactaacatacttagactcatcacttcccaagtatagagcagcttcagccacatcttttggcacaagattagcaccctttaggttagaataaacatctag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
18929285 |
cactaacatacttagactcatcacttcccaaatacaaagcagcttcagccacatcttttggcacaagattagtaccctttaggttagaaaaaatatctag |
18929384 |
T |
|
| Q |
116 |
aacatcatcatcatcatcgagcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagc |
215 |
Q |
| |
|
| | || |||||||| ||||||||| | || |||||| |||||| |||| || |||||| ||||||||||||||||||||||| || | |||||| |
|
|
| T |
18929385 |
agctccaccatcatca---agcttaaagaaatttgtaaccatcggagtcgcaagaaaataaggcgacacacaattcacccgaataccgaatggcccaagc |
18929481 |
T |
|
| Q |
216 |
tcgatggccgtgttcctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgcttc |
297 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
18929482 |
tcgatagccgtgtttctcatcagcccaacaacggcgtgctttgaacttgtgtaggcatgtggagcacaaccaccaatgcttc |
18929563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 18938643 - 18938921
Alignment:
| Q |
16 |
cactaacatacttagactcatcacttcccaagtatagagcagcttcagccacatcttttggcacaagattagcaccctttaggttagaataaacatctag |
115 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| |||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
18938643 |
cactaacatacttagattcgtcactgcccaagtaaagagaagcttcagccacatctttaggcacaagattagtaccctttaggttagaataaagccctag |
18938742 |
T |
|
| Q |
116 |
aacatcatcatcatcatcgagcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagc |
215 |
Q |
| |
|
|| | ||||||||| ||||| ||| | |||||| ||| ||| || || |||||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
18938743 |
aagcccttcatcatca---agctttaagaagttcttagccatcggtgtggcgacaatataaggtgaaacacaattcacccgaatactgaacggtccaagt |
18938839 |
T |
|
| Q |
216 |
tcgatggccgtgttcctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgcttc |
297 |
Q |
| |
|
||||| |||||||| ||||||||||| | ||| || ||||||| ||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
18938840 |
tcgattgccgtgtttctcatcagccccaaaacagcatgctttgaacttgtgtaggcatgtgaagccataccacctatgcttc |
18938921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University