View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14450_high_1 (Length: 789)
Name: NF14450_high_1
Description: NF14450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14450_high_1 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 287 - 789
Target Start/End: Original strand, 448279 - 448772
Alignment:
| Q |
287 |
ggtggttaaccatcaatttttagtaaatttcaacctcaaaacttgaattagtttcagatatcttttcaaaatttcccttgcatattaggactatcacgta |
386 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || ||| |
|
|
| T |
448279 |
ggtggttaactatcaatttttagtaaatttcaacctcaaaacttgaattagtttcagatatcgtttcaaaatttcccttgcatattaagactaccatgta |
448378 |
T |
|
| Q |
387 |
actttttcgtagacctgccttcacgctaattaaacatcgtcgtaaaataac---nnnnnnnnnnnnngatgcaagaaatggaatagatggaagaacgaga |
483 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
448379 |
actttttcgtagacctgccatcacgctaattaaacatcgccgtaaaataacaaaaaaaaaaaaaaaagatgcaagaaatggaatagatggaagaacgaga |
448478 |
T |
|
| Q |
484 |
agattgtggtagagatggagacagagtctagacaacctacatttcccttatgnnnnnnngtgtgcgaaaatgtttcccttttagatttccctttgaggcg |
583 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
448479 |
agattgtggtagagattgagacagagtctagacaacctacatttcccttatgaaaaaaagtgtgcgaaaatg-------------tttccctttgaggcg |
448565 |
T |
|
| Q |
584 |
tcctatctttcatttcatttcacccaaaaagtagccatttcgtaagaaaatgaggagtgttcgtttgtgtcgaattgggagtaattttctgattattatt |
683 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
448566 |
tcctatctttcatttgatttcacccaaaaagtagccatttcgtaagaaaatgaggagttttcgtttgtgtcgaattgggagtaattttctgaatattatt |
448665 |
T |
|
| Q |
684 |
t-nnnnnnntgttatttgagtatgatcattaaagtgttaaagtatataagtattcaataatgggcttaattaacgagctaaataaacaccccaagttagt |
782 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
448666 |
taaaaaaaatgtaatttgagtatgatcattaaagtgttaaagtatataagtatgcaataatgggcttaattaacgagctaaataaacaccccaagttagt |
448765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 447970 - 448240
Alignment:
| Q |
1 |
gctctggctctcttgaaactgtgaatattcaaagtttgtatctctagaaatttgtattggtgtttccttttttctctggcttctttgttgttcttttgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
447970 |
gctctggctctcttgaaactgtgaatattcaaagtttgtatctctagaaatttgtattggtgtttccttttttctctggcttctttgttgttcttttgcg |
448069 |
T |
|
| Q |
101 |
gttgaacttgtatgttatatactgattcaaataaaatatgtatgaaagatcnnnnnnngtccaataataagaacatacttgaattttacaatttgtgaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
448070 |
gttgaacttgtatgttatatactgattcaaataaaatatgtatgaaagatctttttttgtccaataataagaacatacttgaattttacaatttgttaaa |
448169 |
T |
|
| Q |
201 |
acttttttgccaataattcttgaggggcttttagaagccacaaatctttttaaagttgaccacaaatcagt |
271 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
448170 |
acttttttgccaataattcttgagggccttttagaagccacaaatctttttaaagttgaccacaaatcagt |
448240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University