View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14450_high_2 (Length: 553)

Name: NF14450_high_2
Description: NF14450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14450_high_2
NF14450_high_2
[»] chr5 (7 HSPs)
chr5 (9-539)||(29688317-29688847)
chr5 (29-530)||(29711799-29712308)
chr5 (9-528)||(29696432-29696960)
chr5 (17-139)||(9120354-9120479)
chr5 (339-380)||(179405-179446)
chr5 (322-377)||(9120113-9120168)
chr5 (470-513)||(42562131-42562174)
[»] chr4 (27 HSPs)
chr4 (234-371)||(48853037-48853174)
chr4 (274-380)||(45365828-45365934)
chr4 (234-368)||(49043736-49043870)
chr4 (275-380)||(7790427-7790532)
chr4 (243-380)||(7771742-7771879)
chr4 (287-367)||(49038499-49038579)
chr4 (298-369)||(45384524-45384595)
chr4 (286-377)||(48899090-48899181)
chr4 (243-377)||(7773402-7773536)
chr4 (303-380)||(7878730-7878807)
chr4 (290-371)||(48870916-48870997)
chr4 (290-371)||(48876220-48876301)
chr4 (290-371)||(48886602-48886683)
chr4 (312-368)||(48147359-48147415)
chr4 (23-148)||(48871142-48871267)
chr4 (23-148)||(48876446-48876571)
chr4 (23-148)||(48886828-48886953)
chr4 (305-371)||(45371713-45371779)
chr4 (305-367)||(48864395-48864457)
chr4 (112-214)||(50666822-50666924)
chr4 (275-380)||(7908649-7908754)
chr4 (17-73)||(50673467-50673523)
chr4 (321-366)||(47208238-47208283)
chr4 (305-377)||(7765992-7766064)
chr4 (305-377)||(7786814-7786886)
chr4 (302-366)||(7813838-7813902)
chr4 (9-73)||(37826333-37826397)
[»] chr8 (4 HSPs)
chr8 (9-156)||(15349463-15349609)
chr8 (312-380)||(12195671-12195739)
chr8 (312-380)||(12440099-12440167)
chr8 (305-366)||(15349244-15349305)
[»] chr3 (5 HSPs)
chr3 (109-378)||(47451340-47451612)
chr3 (109-153)||(11014934-11014978)
chr3 (462-520)||(11005718-11005776)
chr3 (312-366)||(11024149-11024203)
chr3 (323-375)||(11015148-11015200)
[»] chr6 (1 HSPs)
chr6 (234-368)||(21016180-21016314)
[»] chr7 (1 HSPs)
chr7 (177-214)||(30124825-30124862)


Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 9 - 539
Target Start/End: Complemental strand, 29688847 - 29688317
Alignment:
Q  9 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgcgtcatcttcttaagcctgatcactgtcac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688847 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgcgtcatcttcttaagcctgatcactgtcac 29688748  T
Q  109 caccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29688747 caccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtaggagtgatgctctagcagctgtcctttatcatt 29688648  T
Q  209 atacttggccaatacattatcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688647 atacttggccaatacattatcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaaga 29688548  T
Q  309 acgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatcagtgcacatatcaaatagactgagacatc 408  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688547 acgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgtaccattatcagtgcacatatcaaatagactgagacatc 29688448  T
Q  409 ctctgaatagccataaatcatacactctaggaccattatttataccaataggcaaaggcaactctataagtttcctttccgttaaatgaaatccaacaat 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688447 ctctgaatagccataaatcatacactctaggaccattatttataccaataggcaaaggcaactctataagtttcctttccgttaaatgaaatccaacaat 29688348  T
Q  509 aacattcattgatctatcataatgacaagcc 539  Q
    ||||||||||||||||||||||||| |||||    
T  29688347 aacattcattgatctatcataatgaaaagcc 29688317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 29 - 530
Target Start/End: Original strand, 29711799 - 29712308
Alignment:
Q  29 agatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtc-tgcgt--catcttcttaagcctgatcactgtcaccaccaggaagtgaaagc 125  Q
    |||||| |||||||||||||| |||||||| || ||||| ||||| |  | |||  |||||||||| || ||| ||||||||||| |||||| |||||||    
T  29711799 agatcacgaaaatggtgaaggagaatacttcaagacctcgttcttcttattcgtttcatcttctta-gcttgaccactgtcaccatcaggaattgaaagc 29711897  T
Q  126 agagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcattatacttggccaatacat 225  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||| || |||||||||||||| |||||||| ||||||||||||||||||||||    
T  29711898 agagattctgtatacataaccactagggatccatattcattgtcacagtaggactgatgctctagcagttgtcctttctcattatacttggccaatacat 29711997  T
Q  226 t---atcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgt 322  Q
    |   | | |  |||||||||||||||||||||||||||   |||||||||||||| || ||  |||||||  || ||||||| | ||| |||||||| ||    
T  29711998 taccagcatttgttccaacgatatcaccactttttgtatcgtatttcggacaaaaataatggctgggaattccatcaaaagacaaaacaagagtcttagt 29712097  T
Q  323 ccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca-gtgcacatatcaaatagactgagacatcctctgaatagcca 421  Q
    |||||| |||   ||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||||| |||| |||    
T  29712098 ccaagaagatgtcacattgtatttttccatcacccatatttcaactgtaccattatcatgtgc-catatcccatagactgagacatcctctaaataccca 29712196  T
Q  422 taaatcatacact---ctaggaccattatttataccaataggcaaaggcaactctataagtttcctttccgttaaatgaaatccaacaataacattcatt 518  Q
    |||||||||||||   |||||| ||    ||||| ||   ||||||| |||||||| ||| | ||||| | |||||||| | |||| |||||||||| ||    
T  29712197 taaatcatacactttactaggagcagatgttatatcagctggcaaagtcaactctagaagctccctttgcattaaatgatagccaagaataacattcgtt 29712296  T
Q  519 gatctatcataa 530  Q
    ||| ||||||||    
T  29712297 gatatatcataa 29712308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 9 - 528
Target Start/End: Complemental strand, 29696960 - 29696432
Alignment:
Q  9 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgc---gtcatcttcttaagcctgatcactgt 105  Q
    ||||||| ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| |  |    ||||||||||||| | ||| ||||||    
T  29696960 ataatacaatataattataaagatcatgaaaatggtgaagaagaatacttcaaaacctcattcttcttggttctgtcatcttcttaaacttgaccactgt 29696861  T
Q  106 caccaccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatc 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| |  |||  |||| |||||||| ||| ||||||||||||| ||    
T  29696860 caccaccaggaattgaaagcagagattctgtatacataaccactggggatacatattgactgtcacagtaggagtgatgttcttgcagctgtcctttgtc 29696761  T
Q  206 attatacttggccaatacatta---tcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaa 302  Q
    |||||||||||||||| ||  |     ||   |||||||||||||||||||||||||| | |||||||| |||||| |||||   ||| || || |||||    
T  29696760 attatacttggccaatgcacaacgcatgtttcttccaacgatatcaccactttttgtatagtatttcggccaaaaggagtgagcaggattgccatcaaaa 29696661  T
Q  303 gaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatcagtgcacatatcaaatagactga 402  Q
    || || || |||||||| |||||||| ||||| ||||||||||||| |||||||||||||| || |||| |  ||||||   | ||||   |||||  ||    
T  29696660 gacaggacaagagtcttagtccaagaggattgcacattgtatttttccatcacccatatttgaaatgtaactctatcaggcaaaatatgccatagagcga 29696561  T
Q  403 gacatcctctgaatagccataaatcatacac---tctaggaccattatttataccaataggcaaaggcaactctataagtttcctttccgttaaatgaaa 499  Q
    ||||||||||  | | ||||||||||||| |    |||||||||||  ||||  || | |||||| ||||||||| ||||||||||||  ||||||||||    
T  29696560 gacatcctctatacacccataaatcatacgccctgctaggaccattgattatctcatttggcaaacgcaactctagaagtttcctttcaattaaatgaaa 29696461  T
Q  500 tccaacaataacattcattgatctatcat 528  Q
      |||||||||||  ||||||| ||||||    
T  29696460 ggcaacaataacaggcattgatatatcat 29696432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 9120479 - 9120354
Alignment:
Q  17 atataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat------tcttgtctgcgtcatcttcttaagcctgatcactgtcacca 110  Q
    |||||| |||||| |||| |||||||||||||| ||||| || ||||||||||      |||||| || ||||||| ||||||| || ||| |||   ||    
T  9120479 atataactataaaaatcaagaaaatggtgaaggagaatatttcaaaacctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgt---ca 9120383  T
Q  111 ccaggaagtgaaagcagagattctgtata 139  Q
    ||||| |||||||||||||| ||||||||    
T  9120382 ccagggagtgaaagcagagactctgtata 9120354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 179446 - 179405
Alignment:
Q  339 ttgtattttttcatcacccatatttcaactgtaccattatca 380  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  179446 ttgtattctttcatcacccatatttcaactgtatcattatca 179405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 9120168 - 9120113
Alignment:
Q  322 tccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 377  Q
    ||||||| || || || ||||||| ||||||||||||||||||||||||| |||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcatta 9120113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 513
Target Start/End: Original strand, 42562131 - 42562174
Alignment:
Q  470 ctctataagtttcctttccgttaaatgaaatccaacaataacat 513  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||    
T  42562131 ctctagaagtttcctttccgttaaatgaaaggcaacaataacat 42562174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 234 - 371
Target Start/End: Complemental strand, 48853174 - 48853037
Alignment:
Q  234 gttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgatt 333  Q
    |||||||  ||||||||||| ||||||||| || | ||  ||||||||||| ||||||||  || |||||||||||| |||||||| |||||||||||      
T  48853174 gttccaataatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaac 48853075  T
Q  334 gtacattgtattttttcatcacccatatttcaactgta 371  Q
    | || ||||||| |||||| ||||||||||||||||||    
T  48853074 gcactttgtattctttcatgacccatatttcaactgta 48853037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 274 - 380
Target Start/End: Original strand, 45365828 - 45365934
Alignment:
Q  274 aaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacc 373  Q
    ||||||| ||| |||||||| || ||| || ||||||| |||||||||||||||||||  | || || |||| ||||||||||||||||||||||||| |    
T  45365828 aaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatc 45365927  T
Q  374 attatca 380  Q
    |||||||    
T  45365928 attatca 45365934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 49043736 - 49043870
Alignment:
Q  234 gttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgatt 333  Q
    |||||||  ||||||||| ||||||||||| || | |||   ||||| ||| |||||||| || ||| ||||| ||| |||||||| ||||| ||||| |    
T  49043736 gttccaataatatcaccaatttttgtacaacatattggagcgaagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaat 49043835  T
Q  334 gtacattgtattttttcatcacccatatttcaact 368  Q
    | || ||||||| ||||||||||||||||||||||    
T  49043836 gcactttgtattctttcatcacccatatttcaact 49043870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 275 - 380
Target Start/End: Complemental strand, 7790532 - 7790427
Alignment:
Q  275 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacca 374  Q
    ||||||||||   |||||| || ||| ||||||||| ||||| || ||||||||||| || || ||||||| |||||||||||||||||||| |||| ||    
T  7790532 aaagtagtgatcaggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatca 7790433  T
Q  375 ttatca 380  Q
    ||||||    
T  7790432 ttatca 7790427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 380
Target Start/End: Complemental strand, 7771879 - 7771742
Alignment:
Q  243 atatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgt 342  Q
    ||||||||| |||||||| ||||| | ||   ||||||||||   |||||| || ||| ||||||||| ||||| || ||||| ||||| || || ||||    
T  7771879 atatcaccattttttgtagaatatataggttgaaagtagtgatcaggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgt 7771780  T
Q  343 attttttcatcacccatatttcaactgtaccattatca 380  Q
    ||| |||||||||||||||| ||| |||| ||||||||    
T  7771779 attctttcatcacccatattacaattgtatcattatca 7771742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 367
Target Start/End: Original strand, 49038499 - 49038579
Alignment:
Q  287 gggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaac 367  Q
    ||||||| ||| || ||| ||||| |||||||| ||||||||||| || || ||||||| |||||||||||||||||||||    
T  49038499 gggaatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 369
Target Start/End: Original strand, 45384524 - 45384595
Alignment:
Q  298 caaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactg 369  Q
    |||||| ||||||  ||||||||||||||||||| || || || |||| |||||||||||||||||||||||    
T  45384524 caaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactg 45384595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 377
Target Start/End: Complemental strand, 48899181 - 48899090
Alignment:
Q  286 tgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 377  Q
    |||||||| || ||| || |||||| ||||||  ||||||||| |||| ||| || |||| ||||||||||||||||||||||||| |||||    
T  48899181 tgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctttcatcacccatatttcaactgtatcatta 48899090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 377
Target Start/End: Original strand, 7773402 - 7773536
Alignment:
Q  243 atatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgt 342  Q
    ||||||||| |||||||| ||||| | ||   ||||||||||   |||||| |  ||| ||||||||| ||||  ||  |||||||||| || || ||||    
T  7773402 atatcaccattttttgtagaatatataggttgaaagtagtgatcaggaatggcttcaacagaaagaacaagagatttaatccaagacgaatgcactttgt 7773501  T
Q  343 attttttcatcacccatatttcaactgtaccatta 377  Q
    ||| ||||||||||||||||||||||||| |||||    
T  7773502 attctttcatcacccatatttcaactgtatcatta 7773536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 380
Target Start/End: Complemental strand, 7878807 - 7878730
Alignment:
Q  303 gaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 380  Q
    |||||||| ||||| ||  ||||||| || || || ||||||| ||||||||||||||||||||||||| ||||||||    
T  7878807 gaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatca 7878730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 48870997 - 48870916
Alignment:
Q  290 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 371  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48870997 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48870916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 48876301 - 48876220
Alignment:
Q  290 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 371  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48876301 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48876220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 48886683 - 48886602
Alignment:
Q  290 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 371  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48886683 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48886602  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 48147359 - 48147415
Alignment:
Q  312 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaact 368  Q
    |||||||| ||||||||||| || || ||||||| ||||||||||||||||||||||    
T  48147359 agagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 48871267 - 48871142
Alignment:
Q  23 ttataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat---tcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagt 119  Q
    ||||||| |||| |||||||||||||| ||||| || ||||||||||   |||||| || |||| |||||||| |||| ||| |||   ||||||| |||    
T  48871267 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgt---caccagggagt 48871171  T
Q  120 gaaagcagagattctgtatacataaccac 148  Q
    ||||||| ||| |||||||| ||| ||||    
T  48871170 gaaagcaaagactctgtatagatagccac 48871142  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 48876571 - 48876446
Alignment:
Q  23 ttataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat---tcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagt 119  Q
    ||||||| |||| |||||||||||||| ||||| || ||||||||||   |||||| || |||| |||||||| |||| ||| |||   ||||||| |||    
T  48876571 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgt---caccagggagt 48876475  T
Q  120 gaaagcagagattctgtatacataaccac 148  Q
    ||||||| ||| |||||||| ||| ||||    
T  48876474 gaaagcaaagactctgtatagatagccac 48876446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 48886953 - 48886828
Alignment:
Q  23 ttataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat---tcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagt 119  Q
    ||||||| |||| |||||||||||||| ||||| || ||||||||||   |||||| || |||| |||||||| |||| ||| |||   ||||||| |||    
T  48886953 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgt---caccagggagt 48886857  T
Q  120 gaaagcagagattctgtatacataaccac 148  Q
    ||||||| ||| |||||||| ||| ||||    
T  48886856 gaaagcaaagactctgtatagatagccac 48886828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 45371713 - 45371779
Alignment:
Q  305 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 371  Q
    |||||| | |||||| ||||||||||| || || ||||||| |||||| ||||||||||||||||||    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgta 45371779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 48864457 - 48864395
Alignment:
Q  305 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaac 367  Q
    |||||| ||| |||| ||||||||||| || || ||||||| |||||||||||||||||||||    
T  48864457 aagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 50666924 - 50666822
Alignment:
Q  112 caggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcattata 211  Q
    ||||||||||||| ||||| ||||||||||| |||||| ||||||||| |  || ||| || || |||||||| |||| || ||| ||||||| ||| ||    
T  50666924 caggaagtgaaagtagagactctgtatacatgaccacttgggatccatctggatcgtcggaataagagtgatgatctaacaactgccctttataattgta 50666825  T
Q  212 ctt 214  Q
    |||    
T  50666824 ctt 50666822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 380
Target Start/End: Complemental strand, 7908754 - 7908649
Alignment:
Q  275 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacca 374  Q
    ||||||||||   |||||| || ||| ||||||||| ||||| ||  ||||||| || || || ||||||| |||||||||||||||||||| |||| |     
T  7908754 aaagtagtgatcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaagtgtatct 7908655  T
Q  375 ttatca 380  Q
    ||||||    
T  7908654 ttatca 7908649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 50673523 - 50673467
Alignment:
Q  17 atataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattctt 73  Q
    ||||||||||||| |||| ||||||||||||||  |||| || ||||||||||||||    
T  50673523 atataattataaatatcaagaaaatggtgaaggaaaatattttaaaacctcattctt 50673467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 47208283 - 47208238
Alignment:
Q  321 gtccaagacgattgtacattgtattttttcatcacccatatttcaa 366  Q
    |||||||| |||||||| ||||||| ||||||||||| ||||||||    
T  47208283 gtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 7766064 - 7765992
Alignment:
Q  305 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 377  Q
    |||||| || ||||| ||||| ||||| |  || ||||||| |||||||||||||||||||| |||| |||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcatta 7765992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 7786886 - 7786814
Alignment:
Q  305 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 377  Q
    |||||| ||||||||  |||||||  | || || ||||||| |||||||||||||||||||| |||| |||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcatta 7786814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 7813902 - 7813838
Alignment:
Q  302 agaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 366  Q
    ||||||||| ||||| ||  |||||||||| || || ||||||| ||||| ||||||||||||||    
T  7813902 agaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 37826333 - 37826397
Alignment:
Q  9 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattctt 73  Q
    ||||||| ||||||||  ||| |||| |||||||||||||| ||||| ||  |||||||||||||    
T  37826333 ataatacaatataattgaaaatatcaagaaaatggtgaaggagaatattttgaaacctcattctt 37826397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 15349609 - 15349463
Alignment:
Q  9 ataatactatataatt--ataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgcgtcatcttcttaagcctgatcactgtc 106  Q
    ||||||| ||||||||  ||||| ||||  ||||||||||||| |||||  |||||||||||||||||| |||||| || ||||||||||| |||   |     
T  15349609 ataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacctcattcttgtttgcgtcgtcctcttaagcctgctca---tt 15349513  T
Q  107 accaccaggaagtgaaagcagagattctgtatacataaccactagggatc 156  Q
    | ||||||| |||||||||||||| |||||||||||| ||||| ||||||    
T  15349512 atcaccagggagtgaaagcagagactctgtatacatagccacttgggatc 15349463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 12195739 - 12195671
Alignment:
Q  312 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 380  Q
    |||||||| |||||||| ||||||   ||||||| ||||||| |||||||||||||||| | |||||||    
T  12195739 agagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatca 12195671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 12440167 - 12440099
Alignment:
Q  312 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 380  Q
    |||||||| |||||||| ||||||   ||||||| ||||||| |||||||||||||||| | |||||||    
T  12440167 agagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatca 12440099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 15349305 - 15349244
Alignment:
Q  305 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 366  Q
    |||||| ||| ||||||||||||| || |  || ||||||| ||||||||||||||||||||    
T  15349305 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 378
Target Start/End: Original strand, 47451340 - 47451612
Alignment:
Q  109 caccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcatt 208  Q
    |||| ||||||||||||||||| ||||| |||||||||||| || ||||| ||  || ||   | || ||  ||||||||| || ||||||||| |||||    
T  47451340 caccgggaagtgaaagcagagactctgtgtacataaccacttggcatccacatggatcgttacaataggaacgatgctctaacaactgtcctttgtcatt 47451439  T
Q  209 atacttggccaatac---attatcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaa 305  Q
    ||||||  ||||| |   || ||| || |||||||  |||||||||||||||||| |   |   ||  ||||||| |||  ||||||| || ||| || |    
T  47451440 atacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgtagaggttaaggggtaaaagtactgagagggaatgccatcaatagga 47451539  T
Q  306 agaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattat 378  Q
    ||||| |||||||||  ||||||||| |  || ||||||| |||||||||||||||||||||| || ||||||    
T  47451540 agaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattat 47451612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 11014934 - 11014978
Alignment:
Q  109 caccaggaagtgaaagcagagattctgtatacataaccactaggg 153  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||    
T  11014934 caccagggagtgaaagcagagactctgtgtacataaccactaggg 11014978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 520
Target Start/End: Original strand, 11005718 - 11005776
Alignment:
Q  462 aaaggcaactctataagtttcctttccgttaaatgaaatccaacaataacattcattga 520  Q
    ||||||| ||||| |||||||||||||  ||||| ||| ||||||||||||| ||||||    
T  11005718 aaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattga 11005776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 11024149 - 11024203
Alignment:
Q  312 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 366  Q
    |||||||| ||||||||||| || || ||||||| |||||| |||||||||||||    
T  11024149 agagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 11015148 - 11015200
Alignment:
Q  323 ccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccat 375  Q
    ||||||||| || || ||||||| |||||| ||||||||||||||||| ||||    
T  11015148 ccaagacgaatgcactttgtattctttcataacccatatttcaactgttccat 11015200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 21016314 - 21016180
Alignment:
Q  234 gttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgatt 333  Q
    |||||||  ||||||||||||||||||||| || | ||| | || ||  || ||||||||||| ||| ||| | |   |||||||| ||||||||||| |    
T  21016314 gttccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaat 21016215  T
Q  334 gtacattgtattttttcatcacccatatttcaact 368  Q
    |||| ||||||| |||||| |||||||||||||||    
T  21016214 gtactttgtattctttcataacccatatttcaact 21016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 30124825 - 30124862
Alignment:
Q  177 gagtgatgctctagcagctgtcctttatcattatactt 214  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  30124825 gagtgatgctctagcagctgtcctttgtcattaaactt 30124862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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