View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14450_high_4 (Length: 385)
Name: NF14450_high_4
Description: NF14450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14450_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 175 - 342
Target Start/End: Original strand, 41076217 - 41076384
Alignment:
| Q |
175 |
attagtatatgacattggttactttgacacaacccaatattttttatactacatatttctcatggtatattggtttataggagtatcattattttgatct |
274 |
Q |
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| T |
41076217 |
attagtatatgacattggttactttgacacaacccaatattttttatactacatatttctcatggtatattggtttataggagtatcattattttgatct |
41076316 |
T |
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| Q |
275 |
attgtaagtgcaaatgaagctatgatgttataatttaaaataatgtcaaaaatatttgttacaaataa |
342 |
Q |
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| T |
41076317 |
attgtaagtgcaaatgaagctatgatgttataatttaaaataatgtcaaaaatatttgttacaaataa |
41076384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 41075922 - 41076069
Alignment:
| Q |
17 |
gttctaacaccttttatgtctgtcttatctttttcttgaactttttatgtttatacagttgaatctcatgaagagtgagaggagccatatggtacgaatt |
116 |
Q |
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| T |
41075922 |
gttctaacaccttttatgtctgtcttatctttttcttgaactttttatgtttatacagttgaatctcatgaagagtgagaggagccatatggtacgaatt |
41076021 |
T |
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| Q |
117 |
cgcaagccaggagctttatactattagtttatgcttagaaaagacgga |
164 |
Q |
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| T |
41076022 |
cgcaagccaggagctttatactattagtttatgcttagaaaagacgga |
41076069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 41089737 - 41089785
Alignment:
| Q |
295 |
tatgatgttataatttaaaataatgtcaaaaatatttgttacaaataaa |
343 |
Q |
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| T |
41089737 |
tatgatgttataatttaaaataatgtcaaaaatctttatcacaaataaa |
41089785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 4131979 - 4131938
Alignment:
| Q |
52 |
ttgaactttttatgtttatacagttgaatctcatgaagagtg |
93 |
Q |
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| T |
4131979 |
ttgaattttttatgtttatacagatgaatcgcatgaagagtg |
4131938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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