View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14450_high_7 (Length: 209)
Name: NF14450_high_7
Description: NF14450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14450_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 25421039 - 25421188
Alignment:
| Q |
1 |
atgaaaagttttaattcatatcaaatatatcttatgacatgacaaa-ctatctcatattcatttatatgccagtagctttagttacataaacaaatgaat |
99 |
Q |
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| T |
25421039 |
atgaaaagttttaattcatgtcaaattaatcttatgacatgacaaagctatctcatattcatttatatgccaatagctttagttacataaacaattgaat |
25421138 |
T |
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| Q |
100 |
tggttatagtgttagcgatgtgggactaaaaatttgtttcggatgtgatg |
149 |
Q |
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| T |
25421139 |
tggttatagtgttagcgatgtgggactataaatttgtttcggatgtgatg |
25421188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 25421232 - 25421286
Alignment:
| Q |
145 |
tgatgctattccagttttctaataaattcgatttcacttcaggcagaatcctttg |
199 |
Q |
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| T |
25421232 |
tgatgctattccagttttctaataaattcgatttcacttcaggcagaatcctttg |
25421286 |
T |
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