View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14450_low_2 (Length: 558)

Name: NF14450_low_2
Description: NF14450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14450_low_2
NF14450_low_2
[»] chr4 (4 HSPs)
chr4 (123-542)||(44630017-44630435)
chr4 (1-96)||(44629896-44629991)
chr4 (35-96)||(10036336-10036397)
chr4 (455-534)||(44680622-44680702)
[»] chr7 (2 HSPs)
chr7 (35-93)||(24240821-24240879)
chr7 (60-95)||(25143533-25143568)
[»] chr3 (2 HSPs)
chr3 (35-93)||(35237143-35237200)
chr3 (22-67)||(21268071-21268115)
[»] chr5 (1 HSPs)
chr5 (38-93)||(10326655-10326710)
[»] scaffold0020 (1 HSPs)
scaffold0020 (36-93)||(8971-9028)
[»] chr1 (1 HSPs)
chr1 (27-92)||(22924016-22924080)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 123 - 542
Target Start/End: Original strand, 44630017 - 44630435
Alignment:
Q  123 gaccaaggtcgtggcataaccttcaatctatgtggaagtgtcagtgtcattaggttgtaatggcaaaaacagacggagggggacaaatgtttgacaaaac 222  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44630017 gaccacggtcgtggcataaccttcgatctacgtggaagtgtcagtgtcattaggttgtaatggcaaaaacagacggagggggacaaatgtttgacaaaa- 44630115  T
Q  223 cagagtttttgaagtttcacaaaattgatgggaattttttatgaaagttgcaatttcagagaataattgacttcttgnnnnnnnnnaa-taaagagggta 321  Q
    |||||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||         || |||||||||||    
T  44630116 cagagtttttgaagtttcgcaaaattgatggaaatattttacgaaagttgcaatttcagagaataattgacttcttgtttttttttaattaaagagggta 44630215  T
Q  322 atctactatttactcataatcccaaatgnnnnnnnnnnaatcaaccaatcaaaagacggaatccaac-nnnnnnnttgatgtatttttatattcgttaat 420  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||| |||        |||||||||||||||||| ||||||    
T  44630216 atctactatttactcataatcccaaatg--ttttttttaatcaaccaatcaaaagacggaatctaacaaaaaaaattgatgtatttttatattggttaat 44630313  T
Q  421 cttatccatccaataatctttccttttcttgacgtattttctattgcttatactttgtatttattccttttccactgttcggctgatgatttaatcaaag 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44630314 cttatccatccaataatctttccttttcttgacgtattttctattgcttatactttgtatatattccttttccactgttcggctgatgatttaatcaaag 44630413  T
Q  521 agattatgtagcttgtagttct 542  Q
    ||| | ||||||||||||||||    
T  44630414 agactctgtagcttgtagttct 44630435  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 44629896 - 44629991
Alignment:
Q  1 gttaggactaattaaggtaatgaggggtatttgttacataagttttaaatttgatgggtgtatttgtctatttttataatcacacatattttagac 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  44629896 gttaggactaattaaggtaatgaggggtatttgttacataagttttaaatttgaagggtgtatttgtctatttttataaccacgcatattttagac 44629991  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 10036397 - 10036336
Alignment:
Q  35 tacataagttttaaatttgatgggtgtatttgtctatttttataatcacacatattttagac 96  Q
    |||||||||||||||||||| ||| | ||||| ||||||||||||||||||| |||||||||    
T  10036397 tacataagttttaaatttgaagggggcatttgcctatttttataatcacacaaattttagac 10036336  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 534
Target Start/End: Original strand, 44680622 - 44680702
Alignment:
Q  455 tattttctattgcttatactttgtatttattcc-ttttccactgttcggctgatgatttaatcaaagagattatgtagctt 534  Q
    ||||||||  |||||| ||||||||| |||| | ||||||||||| |||||||||| ||||||||||||| | ||||||||    
T  44680622 tattttcttatgcttagactttgtatatattacattttccactgtccggctgatgaattaatcaaagagaatctgtagctt 44680702  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 24240879 - 24240821
Alignment:
Q  35 tacataagttttaaatttgatgggtgtatttgtctatttttataatcacacatatttta 93  Q
    ||||||||||||||| |||| ||| ||||||| ||||||||||||||||| | ||||||    
T  24240879 tacataagttttaaagttgaggggggtatttgcctatttttataatcacaaaaatttta 24240821  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 25143568 - 25143533
Alignment:
Q  60 gtatttgtctatttttataatcacacatattttaga 95  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25143568 gtatttgtctatttttataatcacacagattttaga 25143533  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 35237143 - 35237200
Alignment:
Q  35 tacataagttttaaatttgatgggtgtatttgtctatttttataatcacacatatttta 93  Q
    ||||||||||||||||||||  ||  ||||| |||||||||||||||||||||||||||    
T  35237143 tacataagttttaaatttgagagga-tatttatctatttttataatcacacatatttta 35237200  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 21268115 - 21268071
Alignment:
Q  22 gaggggtatttgttacataagttttaaatttgatgggtgtatttgt 67  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||||    
T  21268115 gaggggtatttgctacataagttttaaatttga-gggggtatttgt 21268071  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 10326655 - 10326710
Alignment:
Q  38 ataagttttaaatttgatgggtgtatttgtctatttttataatcacacatatttta 93  Q
    |||||| ||||||||||  || ||||||| ||||||||||||||||||| ||||||    
T  10326655 ataagtgttaaatttgagaggggtatttgcctatttttataatcacacaaatttta 10326710  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 8971 - 9028
Alignment:
Q  36 acataagttttaaatttgatgggtgtatttgtctatttttataatcacacatatttta 93  Q
    |||||||| ||||| |||| ||| ||||||| ||||||||||||||||| | ||||||    
T  8971 acataagtattaaagttgaggggggtatttgcctatttttataatcacatagatttta 9028  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 22924016 - 22924080
Alignment:
Q  27 gtatttgttacataagttttaaatttgatgggtgtatttgtctatttttataatcacacatatttt 92  Q
    |||||||||| ||||||||||||||||| | |  || |||| |||||||||||||||||| |||||    
T  22924016 gtatttgttatataagttttaaatttga-gaggataattgtttatttttataatcacacaaatttt 22924080  T

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