View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14450_low_5 (Length: 445)

Name: NF14450_low_5
Description: NF14450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14450_low_5
NF14450_low_5
[»] chr3 (15 HSPs)
chr3 (20-430)||(55082478-55082905)
chr3 (20-209)||(50913419-50913626)
chr3 (20-209)||(38032205-38032412)
chr3 (20-209)||(38038470-38038677)
chr3 (20-209)||(38027378-38027585)
chr3 (20-205)||(38034978-38035181)
chr3 (85-209)||(38041945-38042070)
chr3 (257-353)||(38035286-38035382)
chr3 (203-353)||(50913649-50913797)
chr3 (104-209)||(50906835-50906941)
chr3 (268-346)||(38032518-38032596)
chr3 (268-346)||(38038783-38038861)
chr3 (268-344)||(38027691-38027767)
chr3 (20-73)||(50906990-50907043)
chr3 (203-243)||(38035208-38035248)
[»] chr8 (2 HSPs)
chr8 (20-209)||(21608180-21608387)
chr8 (268-346)||(21608493-21608571)
[»] chr2 (1 HSPs)
chr2 (20-72)||(3072290-3072342)
[»] chr4 (3 HSPs)
chr4 (85-182)||(27421973-27422070)
chr4 (77-181)||(27446144-27446248)
chr4 (82-182)||(27559278-27559378)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 55082905 - 55082478
Alignment:
Q  20 acctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagtatattgctgtttatgttggagagaaaatgaagaggttcctgattcc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55082905 acctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagtatattgctgtttatgttggagagaaaatgaagaggttcctgattcc 55082806  T
Q  120 agtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatccatgggtggtcttacatacaacttct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55082805 agtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatccatgggtggtcttacatacaacttct 55082706  T
Q  220 cgcttgaacggtcaataattaattaattagtgataacatatagcacaataggattgactagctgagacaacattcgtacatcaggaatttctttgtccat 319  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55082705 cgcttgaacggccaataattaattaattagtgataacatatagcacaataggattgactagttgagacaacattcgtacatcaggaatttctttgtccat 55082606  T
Q  320 tttgatctttcctcttaagtggaaatctga-----------------aatggaactatattcttttgaatctatctgttgttttttgcgtcgtcttagat 402  Q
    ||||||||||||||||||||||||||||||                 |||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  55082605 tttgatctttcctcttaagtggaaatctgaaatgagaacctaacttcaatgaaactatattcttttgaatttatctgttgttttttgcgtcgtcttagat 55082506  T
Q  403 gaccgtgtgatgaatcaaacgtcctatg 430  Q
    ||||||||||||||||||||||||||||    
T  55082505 gaccgtgtgatgaatcaaacgtcctatg 55082478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 50913419 - 50913626
Alignment:
Q  20 acctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt-----------------atattgctgtttatgttggagagaaaatg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||                 || |||| || ||||||||||||||||||    
T  50913419 acctggtattagaagatcatcatttagtgcaagtcaatcatctagcaaagaagtggaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatg 50913518  T
Q  103 aagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtg 201  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||    
T  50913519 aagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaatttggctactgtcatccaatgggtg 50913618  T
Q  202 gtcttaca 209  Q
    ||||||||    
T  50913619 gtcttaca 50913626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 38032205 - 38032412
Alignment:
Q  20 acctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt-----------------atattgctgtttatgttggagagaaaatg 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||                 || |||| || ||||||||||||||||||    
T  38032205 acctggtattagacgatcatcatttagtgcaagtcaatcatctatcaaacaagtggaagttccaaaaggctatcttgcagtgtatgttggagagaaaatg 38032304  T
Q  103 aagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtg 201  Q
    |  |||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| || ||||| |||||||| ||||| |    
T  38032305 agaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaattgcttagccaatctgaagaggaattcggttattgtcatccaatgggcg 38032404  T
Q  202 gtcttaca 209  Q
    ||||||||    
T  38032405 gtcttaca 38032412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 38038470 - 38038677
Alignment:
Q  20 acctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt-----------------atattgctgtttatgttggagagaaaatg 102  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||                 || |||| || ||||||||||||||||||    
T  38038470 acctggtattagacgatcatcatttagtgcaagtcaatcatctagcaaacaagtggaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatg 38038569  T
Q  103 aagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtg 201  Q
    |  |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| |    
T  38038570 agaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaattcggttattgtcatccaatgggag 38038669  T
Q  202 gtcttaca 209  Q
    ||||||||    
T  38038670 gtcttaca 38038677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 38027378 - 38027585
Alignment:
Q  20 acctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt-----------------atattgctgtttatgttggagagaaaatg 102  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||                 || |||| || ||||||||||||||||||    
T  38027378 acctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttgcagtgtatgttggagagaaaatg 38027477  T
Q  103 aagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtg 201  Q
    |  |||||  ||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||||| || ||||| |||||||| |||||||    
T  38027478 agaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaattgcttagccaatctgaagaggaattcggttattgtcatccaatgggtg 38027577  T
Q  202 gtcttaca 209  Q
    ||||||||    
T  38027578 gtcttaca 38027585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 38034978 - 38035181
Alignment:
Q  20 acctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt-----------------atattgctgtttatgttggagagaaaatg 102  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||                 || |||| || ||||||||||||||||||    
T  38034978 acctgctattagacgatcatcatttagtgcaagtcaatcatctaacaaacaagtggaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatg 38035077  T
Q  103 aagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtg 201  Q
       |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||    
T  38035078 cgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaattcggttattgtcatccaatgggtg 38035177  T
Q  202 gtct 205  Q
    ||||    
T  38035178 gtct 38035181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 38041945 - 38042070
Alignment:
Q  85 tatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggtt 184  Q
    |||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||| |||||||||||| | |||||||| |||||||| || ||||    
T  38041945 tatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctgaagaggaattcggtt 38042044  T
Q  185 actgtcatc-catgggtggtcttaca 209  Q
    |||||||||  |||||||||||||||    
T  38042045 actgtcatcaaatgggtggtcttaca 38042070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 353
Target Start/End: Original strand, 38035286 - 38035382
Alignment:
Q  257 atatagcacaataggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatg 353  Q
    |||||| |||||||||||||| |  ||||||||  || ||||||||| ||||| |||||| |||||||| ||||||||||||||||||||| |||||    
T  38035286 atataggacaataggattgaccaattgagacaatttttgtacatcagcaatttttttgtcaattttgatgtttcctcttaagtggaaatcttaaatg 38035382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 353
Target Start/End: Original strand, 50913649 - 50913797
Alignment:
Q  203 tcttacatacaacttctcgcttgaacggtcaataattaattaattagtgataacatatagcacaataggattgactagctgagacaacattcgtacatca 302  Q
    ||||||||||| |||||| ||||||| | | |||||| ||  || ||||||||||||  | | | ||||| ||||||| ||||||||  || |||||||     
T  50913649 tcttacatacagcttctcacttgaacagactataattcatgtatgagtgataacata--ggatagtaggactgactagttgagacaagttttgtacatcg 50913746  T
Q  303 ggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatg 353  Q
    | |||||||||||| ||||||||  |||||||||||||||||||| |||||    
T  50913747 gaaatttctttgtcaattttgatgcttcctcttaagtggaaatcttaaatg 50913797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 50906941 - 50906835
Alignment:
Q  104 agaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtgg 202  Q
    |||||||  |||||||||| ||||| ||||||||||||| ||||||||||||| |  | ||||| |||||||| ||  ||||||||||||| ||||||||    
T  50906941 agaggtttttgattccagtgtcattcttgaatgagccttcatttcaagaattgttgcgtcaagccgaagaggaattccgttactgtcatccaatgggtgg 50906842  T
Q  203 tcttaca 209  Q
    |||||||    
T  50906841 tcttaca 50906835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 38032518 - 38032596
Alignment:
Q  268 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc 346  Q
    |||||||||| || ||||||||  || ||||||||| |||||||||||| |||||||| |||||||||| |||||||||    
T  38032518 taggattgaccagttgagacaatttttgtacatcagaaatttctttgtcaattttgatgtttcctcttaggtggaaatc 38032596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 38038783 - 38038861
Alignment:
Q  268 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc 346  Q
    |||||||||| || ||||||||  || ||||||||| || ||||||||| |||||||| ||||||||||||| ||||||    
T  38038783 taggattgaccagttgagacaatttttgtacatcagcaacttctttgtcaattttgatgtttcctcttaagttgaaatc 38038861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 38027691 - 38027767
Alignment:
Q  268 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaa 344  Q
    |||||||||| || ||||| ||  |||||||||||| ||||||||| || |||||||| |||||||||| |||||||    
T  38027691 taggattgaccagttgagataattttcgtacatcagcaatttctttatcaattttgatgtttcctcttatgtggaaa 38027767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 50907043 - 50906990
Alignment:
Q  20 acctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt 73  Q
    |||||||||||||   ||||||||||||||||||||||| |||| |||||||||    
T  50907043 acctggtattagacagtcatcatttagtgcaagtcaatcgtctagcaaacaagt 50906990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 38035208 - 38035248
Alignment:
Q  203 tcttacatacaacttctcgcttgaacggtcaataattaatt 243  Q
    ||||||||||| |||||| ||||||||||| ||||||||||    
T  38035208 tcttacatacagcttctctcttgaacggtctataattaatt 38035248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 21608180 - 21608387
Alignment:
Q  20 acctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt-----------------atattgctgtttatgttggagagaaaatg 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||                 || |||| || ||||||||||||||||||    
T  21608180 acctggtattagacgatcatcatttagtgcaagtcaatcatctatcaaacaagtggaagttccaaaaggctatcttgcagtgtatgttggagagaaaatg 21608279  T
Q  103 aagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtg 201  Q
    |  |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| |    
T  21608280 agaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaattcggttattgtcatccaatgggag 21608379  T
Q  202 gtcttaca 209  Q
    ||||||||    
T  21608380 gtcttaca 21608387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 21608493 - 21608571
Alignment:
Q  268 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc 346  Q
    |||||||||| || |||||||   || ||||||||| |||||||||||| |||||||| |||||||||| || ||||||    
T  21608493 taggattgaccagttgagacattttttgtacatcagtaatttctttgtcaattttgatgtttcctcttatgttgaaatc 21608571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 3072290 - 3072342
Alignment:
Q  20 acctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaag 72  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  3072290 acctggtattagacgatcatcatttagtgcaagtcaatcatctagcaaacaag 3072342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 27422070 - 27421973
Alignment:
Q  85 tatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttgg 182  Q
    ||||||||||| | ||||||  ||||| |||||||||||||||  |||||  | || |||||||||||||| || |  ||||||||||| || |||||    
T  27422070 tatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttgg 27421973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 27446144 - 27446248
Alignment:
Q  77 ttgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagagga 176  Q
    |||| |||||||||||||| ||||||||| | ||  ||||||||   ||||| |||||| | |||| ||||||||| | | | |||||| ||||||| ||    
T  27446144 ttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttcaagagtcgttaagccaatcagaagaaga 27446243  T
Q  177 gtttg 181  Q
    |||||    
T  27446244 gtttg 27446248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 27559378 - 27559278
Alignment:
Q  82 gtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttg 181  Q
    |||||||||||||| ||||||||||| || ||||||||  | ||||| |||||| |  ||| ||||||| | ||  | |||||| ||||||| |||||||    
T  27559378 gtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaagccaatcagaagaagagtttg 27559279  T
Q  182 g 182  Q
    |    
T  27559278 g 27559278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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