View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_high_11 (Length: 444)
Name: NF14451_high_11
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 47321180 - 47321315
Alignment:
| Q |
1 |
ctcacaacattaactaactactgctaaatttaaaataactttgatttctctatttgtaatcaaagcatgaccaactgtattacacatagaaagcaaattc |
100 |
Q |
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| T |
47321180 |
ctcacaacattaactaactactgctaaatttaaaataactttgatttctctatttgtaatcaaagcatgaccaactgtattacacatagaaagcaaattc |
47321279 |
T |
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| Q |
101 |
acataaatcataaacaaattcctcacattattataa |
136 |
Q |
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| T |
47321280 |
acataaatcataaacaaattcctcacattattataa |
47321315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 330 - 433
Target Start/End: Original strand, 47321319 - 47321423
Alignment:
| Q |
330 |
ttctccaattgttccagcttcttcgatctttctgtgtcagcttcacctgttccaactcttacagctttgaaaagcttcaatatttct-aaaattccatca |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
47321319 |
ttctccaattgttccagcttcttcgatctttctgtgtcagcttcacctgttccaactcttacagctttgaaaagcttcaatatttctaaaaaatccatca |
47321418 |
T |
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| Q |
429 |
ttctt |
433 |
Q |
| |
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||||| |
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| T |
47321419 |
ttctt |
47321423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 47317870 - 47317908
Alignment:
| Q |
24 |
ctaaatttaaaataactttgatttctctatttgtaatca |
62 |
Q |
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| T |
47317870 |
ctaaatttaaagtaactttgatttatctatttgtaatca |
47317908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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