View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14451_high_12 (Length: 427)
Name: NF14451_high_12
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 83 - 386
Target Start/End: Original strand, 25444887 - 25445204
Alignment:
| Q |
83 |
ccataacacacaatttcttgagaccagctcaagggagtaatttccacgattgtgtcctgtcaccaaagacgaaattaccaagttttctttctctataaat |
182 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25444887 |
ccataacacacgatttcttgagaccagctcaagggagtaatttccacgatcgtgtcctgtcaccaaagacgaaattactaagttttctttctctataaat |
25444986 |
T |
|
| Q |
183 |
aagagttcttatgaaaaataatcagtcgaatgcttaatttttgaagccaactcctaataattggattaaactcatatttaccaaaattaatttta----- |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25444987 |
aagagttcttatgaaaaataatcagtcgaatgcttaatttttgaagccgactcctaataagtggattaaactcatatttaccaaaattaattttacaaaa |
25445086 |
T |
|
| Q |
278 |
----------caaaattaatcatttcctttttctaacaatttatttgacacatttaataaattaataaacctttnnnnnnncattagaatttttattgtc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
25445087 |
tcaatttaatcaaaattaatcatttcctttttctaacaatttatttgacacatttaataaattaataagcctttaaaaaaacattagaatttttattgt- |
25445185 |
T |
|
| Q |
368 |
caaaagttggagatactat |
386 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
25445186 |
caaaagttggagatactat |
25445204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25444278 - 25444359
Alignment:
| Q |
1 |
ttgcatgggtgacttgnnnnnnntttggaccaagaaatttcatttataaaggcataaaagagcttagggttttgagaactga |
82 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25444278 |
ttgcatgggtgacttgaaaaaaatttggaccaagaaatttcatagataaaggcataaaagagcttagggttttgagaactga |
25444359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University