View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_high_15 (Length: 416)
Name: NF14451_high_15
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 42326544 - 42326260
Alignment:
| Q |
14 |
cagttttgatatgtaagaatgttaattttaggagtgggaattttaaatgggagaatattgttgttgaggaaggaggatcaaggtcacgtcgtgttgttag |
113 |
Q |
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| T |
42326544 |
cagttttgatatgtaagaatgttaattttaggagtgggaattttaaatgggagaatattgttgttgaggaaggaggatcaaggtcacgtcgtgttgttag |
42326445 |
T |
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| Q |
114 |
gtcggtgtttcttcctgttgggaagggacttgacatagcacatgtttcagctgttgggggtaatttgggaaaagatggtcatggtcgtggtggtagtaag |
213 |
Q |
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| T |
42326444 |
gtcggtgtttcttcctgttgggaagggacttgacatagcacatgtttcagctgttgggggtaatttgggaaaagatggtcatggtcgtggtggtagtaag |
42326345 |
T |
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| Q |
214 |
agatggatcaagcatgttgatcaacggtcaggggaggtgcatgttattagacgatgatcaacatgcttaatccatctctacagta |
298 |
Q |
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| T |
42326344 |
agatggattaagcatgttgatcaacggtcaggagaggtgcatgttattagacgataatcaacatgcttaatccatctctatagta |
42326260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 42326218 - 42326152
Alignment:
| Q |
340 |
taaataggctgacaaattatatttgttgtatgctacttgctacaaatcattatatttctttattctt |
406 |
Q |
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| T |
42326218 |
taaataggctgacaaattatatttgtggtatgctacttgctacaaatcattatatttctttattctt |
42326152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 3462131 - 3462097
Alignment:
| Q |
214 |
agatggatcaagcatgttgatcaacggtcagggga |
248 |
Q |
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| T |
3462131 |
agatggattaagcatgttgatcaacggtcagggga |
3462097 |
T |
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