View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14451_high_17 (Length: 380)

Name: NF14451_high_17
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14451_high_17
NF14451_high_17
[»] chr1 (3 HSPs)
chr1 (18-378)||(37492763-37493130)
chr1 (18-191)||(41958361-41958537)
chr1 (18-216)||(38037443-38037645)
[»] chr3 (3 HSPs)
chr3 (72-213)||(6821072-6821213)
chr3 (103-200)||(7129271-7129367)
chr3 (131-164)||(2902709-2902742)
[»] chr5 (5 HSPs)
chr5 (19-200)||(26133521-26133706)
chr5 (103-219)||(26689141-26689258)
chr5 (103-219)||(26958872-26958989)
chr5 (135-214)||(36268325-36268404)
chr5 (109-203)||(25454201-25454295)
[»] chr4 (6 HSPs)
chr4 (104-204)||(1073301-1073401)
chr4 (133-216)||(21050166-21050249)
chr4 (72-160)||(396473-396561)
chr4 (131-203)||(12567665-12567737)
chr4 (85-180)||(43345656-43345751)
chr4 (177-213)||(21782078-21782114)
[»] chr6 (1 HSPs)
chr6 (110-189)||(12343331-12343410)
[»] chr2 (1 HSPs)
chr2 (135-200)||(9733253-9733318)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 37493130 - 37492763
Alignment:
Q  18 ccctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaacgtatttttcagaggaaggaggataacttacatgctctttgtgaaagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37493130 ccctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaacatatttttcagaggaaggaggataacttacatgctctttgtgaaagg 37493031  T
Q  118 gtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttga-ctttgactatcaattatggaggctaaatcctattttcagtttaactgca 216  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37493030 gtaaaacttcagtcatattggtggtttaagtcgaaatatgttttattcgatctttgactatcaattatggaggctaaatcctattttcagtttaactgca 37492931  T
Q  217 cttccttctttatcaaagcttttttcaatacacttcgtg------agacttgatttggttttttaatatatcgattccttttggctttnnnnnnnntaca 310  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||        ||||    
T  37492930 cttccttctttatcaaagcttttttcaatacacttcgtgcttagatgacttgatttggttttttaatatatcaattccttttggctttaacaaaaataca 37492831  T
Q  311 tgtatattgttatagtttttgtttatgttgtgctatcnnnnnnnngtccgacaataatatggagttta 378  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  37492830 tgtatattgttatagtttttgtttatgttgtgctatcttttttttgtccgacaataatatggagttta 37492763  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 41958361 - 41958537
Alignment:
Q  18 ccctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaac----gtatttttcagaggaaggaggataacttacatgctctttgtga 113  Q
    ||||||||||| ||||| ||| |||| ||||  |||||  |||||||| ||||    ||||||||||||| |||||||| |||||||| | |||||||||    
T  41958361 ccctaaatgttatttggttttgtgttgcttgaattattcaaaaggaacgtaacaaacgtatttttcagagaaaggaggacaacttacaggatctttgtga 41958460  T
Q  114 aagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggct 191  Q
    |||| |||| ||||||||||||||||||||||||| |||| ||||||||||  ||||| |||||||||||||||||||    
T  41958461 aaggataaagctttagtcatattggtggtttaagt-aaaaaatgttttattccactttcactatcaattatggaggct 41958537  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 38037443 - 38037645
Alignment:
Q  18 ccctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaac----gtatttttcagaggaaggaggataacttacatgctctttgtga 113  Q
    ||||||||||| ||||||||| ||||  ||||  ||||||||| || | ||||    |||||||||||   |||||||| ||||| || |  || |||||    
T  38037443 ccctaaatgttatttggctttctgttgtttggactatttgaaaagagcgtaacagttgtatttttcagcaaaaggaggaaaacttgcaggtcctatgtga 38037542  T
Q  114 aagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatcctattttcagtttaact 213  Q
    || ||| || ||| |||||||||| ||||||||||| ||||||||||| || || ||||| || |||||||||||| |||||||||||| | ||||||||    
T  38037543 aaaggtgaagcttcagtcatattgatggtttaagtcgaaatatgttttgttcgattttgattaccaattatggaggttaaatcctatttaccgtttaact 38037642  T
Q  214 gca 216  Q
    |||    
T  38037643 gca 38037645  T

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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 213
Target Start/End: Original strand, 6821072 - 6821213
Alignment:
Q  72 tatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgacttt 171  Q
    ||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||| |||| ||||||||||| ||||  |||||||||||||| ||||||    
T  6821072 tattttttagaggaaggaggacaacttacatgctctttgtgaaaaggtgaaacttcagtcgtattggtggttcaagttgaaatatgttttattcgacttt 6821171  T
Q  172 gactatcaattatggaggctaaatcctattttcagtttaact 213  Q
    |||| ||||| |||||||||||||||||||||| ||||||||    
T  6821172 gactgtcaatcatggaggctaaatcctattttctgtttaact 6821213  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 7129367 - 7129271
Alignment:
Q  103 gctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatcctat 200  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||| || ||||| |||||||| ||||||||    
T  7129367 gctctttgtgaaagggtaaaacttt-gtcgtattggtggtttaagtcgaaatatgttttattcgactttgattaccaattctggaggcttaatcctat 7129271  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 2902742 - 2902709
Alignment:
Q  131 catattggtggtttaagtcaaaatatgttttatt 164  Q
    |||||||||||||||| |||||||||||||||||    
T  2902742 catattggtggtttaaatcaaaatatgttttatt 2902709  T

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Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 26133521 - 26133706
Alignment:
Q  19 cctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaac----gtatttttcagaggaaggaggataacttacatgctctttgtgaa 114  Q
    ||||||| || ||||||| | |||| ||||| ||||||| ||||||| ||||    |||||||||| |||||||||||||| ||||| ||||||||  ||    
T  26133521 cctaaatattatttggctgtctgttgcttggattatttggaaggaacgtaacaaacgtatttttcaaaggaaggaggataatttacaggctctttgcaaa 26133620  T
Q  115 agggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatcctat 200  Q
    |||||||| ||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  26133621 agggtaaagcttcagtcgtattggtggtttaagtcgaaatatgttttattcgactttgactatcaactgtggaggctaaatcctat 26133706  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 26689258 - 26689141
Alignment:
Q  103 gctctttgtgaaagggtaaaactttagtcatattggtggtttaagtc-aaaatatgttttatttgactttgactatcaattatggaggctaaatcctatt 201  Q
    ||||||||||||||||| || ||| || | ||||||||||||||||| |||||||||||||||||| ||||| || ||| || ||||||  || | ||||    
T  26689258 gctctttgtgaaagggtgaagcttcagacttattggtggtttaagtcgaaaatatgttttatttgattttgagtaccaactacggaggcataaccttatt 26689159  T
Q  202 ttcagtttaactgcactt 219  Q
    | | |||||| |||||||    
T  26689158 tactgtttaagtgcactt 26689141  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 26958989 - 26958872
Alignment:
Q  103 gctctttgtgaaagggtaaaactttagtcatattggtggtttaagtc-aaaatatgttttatttgactttgactatcaattatggaggctaaatcctatt 201  Q
    ||||||||||||||||| || ||| || | ||||||||||||||||| |||||||||||||||||| ||||| || ||| || ||||||  || | ||||    
T  26958989 gctctttgtgaaagggtgaagcttcagacttattggtggtttaagtcgaaaatatgttttatttgattttgagtaccaactacggaggcataaccttatt 26958890  T
Q  202 ttcagtttaactgcactt 219  Q
    | | |||||| |||||||    
T  26958889 tactgtttaagtgcactt 26958872  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 36268404 - 36268325
Alignment:
Q  135 ttggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatcctattttcagtttaactg 214  Q
    |||||||||||||||||||||||||||||| |||||||| || ||| |||| ||||| |||| || || | |||||||||    
T  36268404 ttggtggtttaagtcaaaatatgttttattcgactttgattaccaactatgaaggcttaatcataattactgtttaactg 36268325  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 25454201 - 25454295
Alignment:
Q  109 tgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatcctatttt 203  Q
    ||||||||||| || ||| | |||||||| |||||||| || ||||| ||  | ||||||||||| || |||||||||||| |||||||||||||    
T  25454201 tgtgaaagggtcaagcttcaatcatattgatggtttaaatcgaaataagtcatgtttgactttgattaccaattatggaggttaaatcctatttt 25454295  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 1073301 - 1073401
Alignment:
Q  104 ctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatcctatttt 203  Q
    ||||||||||||||||| | |||  |||||||||||||||| ||||||| |||||||||||  | |||||||| |||||||||||||||||||| |||||    
T  1073301 ctctttgtgaaagggtatagcttcggtcatattggtggtttgagtcaaagtatgttttattcaattttgactaccaattatggaggctaaatcccatttt 1073400  T
Q  204 c 204  Q
    |    
T  1073401 c 1073401  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 21050249 - 21050166
Alignment:
Q  133 tattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatcctattttcagtttaactgca 216  Q
    ||||||||||||||||| |||||||||||| | || ||||| |||||||||||||||| ||||||||||| | |||||| ||||    
T  21050249 tattggtggtttaagtcgaaatatgttttactcgattttgaatatcaattatggaggcaaaatcctatttactgtttaagtgca 21050166  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 396473 - 396561
Alignment:
Q  72 tatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttt 160  Q
    ||||||||||||||||||||| |  || || ||||||| ||||||||| || ||| | |||||||| ||||||||||||||||||||||    
T  396473 tatttttcagaggaaggaggaaactttgcaggctctttatgaaagggtgaagcttcaatcatattgatggtttaagtcaaaatatgttt 396561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 12567737 - 12567665
Alignment:
Q  131 catattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatcctatttt 203  Q
    |||||||||||||||| || ||||||||||| || || ||||| || |||||||  |||||| ||||||||||    
T  12567737 catattggtggtttaaatcgaaatatgtttttttcgattttgattaccaattataaaggctagatcctatttt 12567665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 43345656 - 43345751
Alignment:
Q  85 aaggaggataacttacatgctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaa 180  Q
    |||||||||||||| || || ||| ||||||| || || ||| |||||| ||||||||| || |||||||| |||   ||||| ||||||||||||    
T  43345656 aaggaggataacttgcaagcgcttggtgaaagagtgaagcttcagtcattttggtggttgaaatcaaaataagttaattttgattttgactatcaa 43345751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 21782114 - 21782078
Alignment:
Q  177 tcaattatggaggctaaatcctattttcagtttaact 213  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  21782114 tcaattatggaggctaaatcttattttctgtttaact 21782078  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 12343410 - 12343331
Alignment:
Q  110 gtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggagg 189  Q
    |||||||||| |||||||||| ||||||||| |||||  | ||||| ||||| || |||||||| || ||||||||||||    
T  12343410 gtgaaagggttaaactttagttatattggtgatttaaagcgaaataagttttgttcgactttgattaccaattatggagg 12343331  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 9733253 - 9733318
Alignment:
Q  135 ttggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatcctat 200  Q
    |||||||||||| ||||||| | |||||||||| ||||||||| | || | ||||| |||||||||    
T  9733253 ttggtggtttaaatcaaaatttattttatttgattttgactataatttttagaggcaaaatcctat 9733318  T

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