View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_high_23 (Length: 298)
Name: NF14451_high_23
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 28258655 - 28258567
Alignment:
| Q |
166 |
cataatatatggcggagagagataacaaatggtgtgttggtaaaaataagttataagctggttgatagttgaaaatttagtttatagtt |
254 |
Q |
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| T |
28258655 |
cataatatatgacggagagagataaaaaatggtgtgttggtaaaaataagatataagctggttgatagttgaaaatttagtttatagtt |
28258567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 28258714 - 28258658
Alignment:
| Q |
33 |
acacgcttaaaccatccgctaataaggtt-gaaaataagttcggtaatggttcatag |
88 |
Q |
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| T |
28258714 |
acacgcttaaaccatccgctaacaaggtttgaaaataagtttggtaatggttcatag |
28258658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 28258548 - 28258502
Alignment:
| Q |
237 |
aaaatttagtttatagttgattactcataacttgtaactgaaaatat |
283 |
Q |
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| T |
28258548 |
aaaatttagtttatagttaattactgataacttgtaactgaaaatat |
28258502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 41205984 - 41206039
Alignment:
| Q |
202 |
ttggtaaaaataagttataagctggttgatagttgaaaatttagtttatagttgat |
257 |
Q |
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| T |
41205984 |
ttggtaaaaataagctataaactaattgatggttgaaaagttagtttatagttgat |
41206039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 22215939 - 22215887
Alignment:
| Q |
202 |
ttggtaaaaataagttataagctggttgatagttgaaaatttagtttatagtt |
254 |
Q |
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| T |
22215939 |
ttggtaaaaataagctataagctagttgatagctgaaaagttagctgatagtt |
22215887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 6433099 - 6433046
Alignment:
| Q |
202 |
ttggtaaaaataagttataagctggttgatagttgaaaatttagtttatagttg |
255 |
Q |
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| T |
6433099 |
ttggcaaaaatgagttataagctagctgatagttgaaaagttagcttatagttg |
6433046 |
T |
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