View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14451_high_33 (Length: 235)

Name: NF14451_high_33
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14451_high_33
NF14451_high_33
[»] chr5 (8 HSPs)
chr5 (1-218)||(39399347-39399564)
chr5 (4-38)||(38987319-38987353)
chr5 (4-38)||(39726041-39726075)
chr5 (4-38)||(40417909-40417943)
chr5 (1-38)||(40596258-40596295)
chr5 (3-38)||(1164143-1164178)
chr5 (3-38)||(1849588-1849623)
chr5 (4-34)||(39879447-39879477)
[»] chr4 (1 HSPs)
chr4 (1-38)||(25912722-25912759)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 39399564 - 39399347
Alignment:
Q  1 aaaatcaaatccccgcagcaaatggggacgatttcaacnnnnnnnttgtaactacactcggaaggaatctgatgacaatgaatcttagagggaactatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39399564 aaaatcaaatccccgcagcaaatggggacgatttcaacaaaaaaattgtaactacactcggaaggaatctgatgacaatgaatcttagagggaactatgt 39399465  T
Q  101 cccttatatattccacaagacacgaagcatgatctaaactgttgaaatagaaagtaaaaccttgatcgttgcgttcgattcgcttaacaccgctaagggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39399464 cccttatatattccacaagacacgaagcatgatctaaactgttgaaatagaaagtaaaaccttgatcgttgcgttcgattcgcttaacaccgctaagggg 39399365  T
Q  201 ttcaaaacagttcataac 218  Q
    ||||||||||||||||||    
T  39399364 ttcaaaacagttcataac 39399347  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 38987353 - 38987319
Alignment:
Q  4 atcaaatccccgcagcaaatggggacgatttcaac 38  Q
    |||||||||||||||||||||||||||||||||||    
T  38987353 atcaaatccccgcagcaaatggggacgatttcaac 38987319  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 39726075 - 39726041
Alignment:
Q  4 atcaaatccccgcagcaaatggggacgatttcaac 38  Q
    |||||||||||||||||||||||||||||||||||    
T  39726075 atcaaatccccgcagcaaatggggacgatttcaac 39726041  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 40417943 - 40417909
Alignment:
Q  4 atcaaatccccgcagcaaatggggacgatttcaac 38  Q
    |||||||||||||||||||||||||||||||||||    
T  40417943 atcaaatccccgcagcaaatggggacgatttcaac 40417909  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40596295 - 40596258
Alignment:
Q  1 aaaatcaaatccccgcagcaaatggggacgatttcaac 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  40596295 aaaatcaaatccccgtagcaaatggggacgatttcaac 40596258  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 1164143 - 1164178
Alignment:
Q  3 aatcaaatccccgcagcaaatggggacgatttcaac 38  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1164143 aatcaaatccccgcagcaaattgggacgatttcaac 1164178  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 1849623 - 1849588
Alignment:
Q  3 aatcaaatccccgcagcaaatggggacgatttcaac 38  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1849623 aatcaaatccccgcagcaaattgggacgatttcaac 1849588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 39879477 - 39879447
Alignment:
Q  4 atcaaatccccgcagcaaatggggacgattt 34  Q
    |||||||||||||||||||||||||||||||    
T  39879477 atcaaatccccgcagcaaatggggacgattt 39879447  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25912722 - 25912759
Alignment:
Q  1 aaaatcaaatccccgcagcaaatggggacgatttcaac 38  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  25912722 aaaatcaaatcccagcagaaaatggggacgatttcaac 25912759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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