View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_high_4 (Length: 685)
Name: NF14451_high_4
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 16 - 652
Target Start/End: Original strand, 9776154 - 9776790
Alignment:
| Q |
16 |
cttatatatagaagatagcttaattaagcaataattaagcaagnnnnnnngttaagcaataattaatacacactaaaaccatgcagtgtagaattgctgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9776154 |
cttatatatagaagatagcttaattaagcaataattaagcaacaaaaaaagttaagcaataattaatacacactaaaaccatgcagtgaagaattgctgc |
9776253 |
T |
|
| Q |
116 |
tacggaagttcaatctccggcaccaccgcaacagagtaactccaccacgttccattaacaagctccggcaactcaatctcaccccaaaaatcatcaccac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776254 |
tacggaagttcaatctccggcaccaccgcaacagagtaactccaccacgttccattaacaagctccggcaactcaatctcaccccaaaaatcatcaccac |
9776353 |
T |
|
| Q |
216 |
caccactaccaccagaatcattgctactatcctccggcgaagcaacagccttaaccatcatacgagctgctttagccgccgcagcttgaatatccctagc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776354 |
caccactaccaccagaatcattgctactatcctccggcgaagcaacagccttaaccatcatacgagctgctttagccgccgcagcttgaatatccctagc |
9776453 |
T |
|
| Q |
316 |
agtacacaaagacggcggaggaagcaccggcagacggtgcacttcatcaggaaaattcagctgtgctttacaacctttcaaacaatatgcagcaacatca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776454 |
agtacacaaagacggcggaggaagcaccggcagacggtgcacttcatcaggaaaattcagctgtgctttacaacctttcaaacaatatgcagcaacatca |
9776553 |
T |
|
| Q |
416 |
taagcctttgcagccatctccggcgccggaaaagaccctagccatattcttgacttttttcttggctctctaatctctgacacccattttccccaccgcc |
515 |
Q |
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| T |
9776554 |
taagcctttgcagccatctccggcgccggaaaagaccctagccatattcttgacttttttcttggctctctaatctctgacacccattttccccaccgcc |
9776653 |
T |
|
| Q |
516 |
ttttcctgacgccgtggaaaaccggatgtctggttccgccacggccagattgggcggtgggattctttgttgttagggtttttactgccacgtcaggttt |
615 |
Q |
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| T |
9776654 |
ttttcctgacgccgtggaaaaccggatgtctggttccgccacggccagattgggcggcgggattctttgttgttagggtttttactgccacgtcaggttt |
9776753 |
T |
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| Q |
616 |
ggttgtgaagttcaaatgttgttgatgctccattcag |
652 |
Q |
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| T |
9776754 |
ggttgtgaagttcaaatgttgttgctgctccattcag |
9776790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 455 - 510
Target Start/End: Complemental strand, 41521749 - 41521694
Alignment:
| Q |
455 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
510 |
Q |
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| T |
41521749 |
agccaaattcttgatttttttcttggctctctaatctctgatacccatttgcccca |
41521694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 510
Target Start/End: Original strand, 16357871 - 16357926
Alignment:
| Q |
455 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
510 |
Q |
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| T |
16357871 |
agccatattcttgacttctttcttggctcacgaatttcagatacccattttcccca |
16357926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 48857030 - 48856996
Alignment:
| Q |
176 |
agctccggcaactcaatctcaccccaaaaatcatc |
210 |
Q |
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| T |
48857030 |
agctccggcaattcaatctcaccccaaaaatcatc |
48856996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 510
Target Start/End: Original strand, 3996430 - 3996488
Alignment:
| Q |
452 |
cctagccatattcttgacttttttcttgg-ctctctaatctctgacacccattttcccca |
510 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||| ||||| |||||||||||||| |
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| T |
3996430 |
cctagccaaattcttga-ttttttcttgggctctctaatttctgaaacccattttcccca |
3996488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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