View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_high_7 (Length: 543)
Name: NF14451_high_7
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 54700471 - 54700998
Alignment:
| Q |
1 |
atccctccaagaggttatttacccaattctcttgatgctcattgagaactgcatcttgagtgagtggaagctgaatcaatttttcaatacgctccatcaa |
100 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||| |
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| T |
54700471 |
atccatccaagaggttatttacccaattttcttgatgctcatggagaagtgcatcttgagtgagtggaagctgaatcaatttttcaacacactcaatcaa |
54700570 |
T |
|
| Q |
101 |
atctcgcaagcctccaattttattgcctagcgctgttgaggaggaagaggtggtttcatttgaagcccttaacaaggtgtccaaatgttcattgcattta |
200 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54700571 |
atctcgcaagcctccaattttattgcaaagcgatgttgaggaggaagaggtggtttcatttgaagcccttaacaaggtgtccaaatgttcattgcattta |
54700670 |
T |
|
| Q |
201 |
agcatgagtgggtgtggtctagatggcaagctgtttgagcgaccatggaaattggattttgagttcaaaggagaggctgccannnnnnnnnnnnnnnnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54700671 |
agcatgagtgggtgtggtctagatggcaagctgtttgagcgaccatggaaattggattttgagttcaaaggagaggctgccatttttattttattttttt |
54700770 |
T |
|
| Q |
301 |
nggttaaggagaaagagaagccttaatgttgaatgttgatttgagtctacggatcagcattcttctcaatatatattatgcgtgttaggcgacacaagga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54700771 |
tggttaaggagaaagagaagccttaatgttgaatgttgatttgagtctacggatctgcattcttctcaatatatattatgcgtgttaggcgacacaagga |
54700870 |
T |
|
| Q |
401 |
atctcatcttaatcacatatcaatgaggccatctaatccagatttggattcagacataattacataaatgttagagccttgtctcccccaaggaatctcc |
500 |
Q |
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| T |
54700871 |
atctcatcttaatcacatatcaatgaggccaactaatccagatttggattcagacataattacataaatgttagagccttgtctcccccaaggaatctcc |
54700970 |
T |
|
| Q |
501 |
ccaactcatactctgtctcatttgcatg |
528 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
54700971 |
ccaactcatactctgtctcatttgcatg |
54700998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 6 - 528
Target Start/End: Original strand, 54688543 - 54689051
Alignment:
| Q |
6 |
tccaagaggttatttacccaattctcttgatgctcattgagaactgcatcttgagtgagtggaagctgaatcaatttttcaatacgctccatcaaatctc |
105 |
Q |
| |
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||||| ||||||||||||| ||| ||||||||||||| |||| ||||||||| || ||||||||||||| ||||||||||| || ||| ||||| | | |
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| T |
54688543 |
tccaaaaggttatttaccccattttcttgatgctcatgtagaagtgcatcttgtgttagtggaagctgaaccaatttttcaacacactcgatcaagtttt |
54688642 |
T |
|
| Q |
106 |
gcaagcctccaattttattgcctagcgctgttgaggaggaagaggtggtttcatttgaagcccttaacaaggtgtccaaatgttcattgcatttaagcat |
205 |
Q |
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| T |
54688643 |
gcaagccatcaattttatggaaaatcaatgatgatgagga------ggtttcattggaagatcttaataaggtgtctaaatgttcattacatttaagaat |
54688736 |
T |
|
| Q |
206 |
gagtgggtgtggtctagatggcaagctgtttgagcgaccatggaaattggattttgagttcaaaggagaggctgccannnnnnnnnnnnnnnnnnnggtt |
305 |
Q |
| |
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||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54688737 |
gagtgggtgtggtcttgatggcaagctgattgagcgaccgtggaaattggattttgagttcaaaggagaggctgccatttttttcttt--------ggtt |
54688828 |
T |
|
| Q |
306 |
aaggagaaagagaagccttaatgttgaatgttgatttgagtctacggatcagcattcttctcaatatatattatgcgtgttaggcgacacaaggaatctc |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688829 |
aaggagaaagagaagccttaatgttgaatgttgatttgagtctacggatctgcattcttctcaatatatattatgcgtgttaggcgacacaaggaatcta |
54688928 |
T |
|
| Q |
406 |
atcttaatcacatatcaatgaggccatctaatccagatttggattcagacataattacataaatgttagagccttgtctcccccaaggaatctccccaac |
505 |
Q |
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| T |
54688929 |
atcttaatcacatatcagagaggccaactaatccagatttggattcagacataattacataaatgttagagccttgtctcccccaaggaatctccccaac |
54689028 |
T |
|
| Q |
506 |
tcatactctgtctcatttgcatg |
528 |
Q |
| |
|
||||| ||||||||||||||||| |
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| T |
54689029 |
tcataatctgtctcatttgcatg |
54689051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 54693130 - 54693382
Alignment:
| Q |
17 |
atttacccaattctcttgatgctcattgagaac----tgcatcttgagtgagtggaagctgaatcaatttttcaatacgctccatcaaatctcgcaagcc |
112 |
Q |
| |
|
||||||||| |||||||||||||||| || || ||||||| ||||||||| ||||||||| || ||||||| || ||| | ||||||||||||||| |
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| T |
54693130 |
atttacccatttctcttgatgctcatggacaagggcatgcatctcgagtgagtgaaagctgaattaaattttcaacacactcgaccaaatctcgcaagcc |
54693229 |
T |
|
| Q |
113 |
tccaattttattgcctagcgctgttgaggaggaagaggtggtttcatttgaagcccttaacaaggtgtccaaatgttcattgcatttaagcatgagtggg |
212 |
Q |
| |
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|||||| |||| | ||| || ||||||| ||||||| |||| ||||| |||||||||||||||| |||||||| ||| ||||||||| |
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| T |
54693230 |
tccaatcttatggtgaagcaatgacgaggagg---------tttcattggaagaccttagtaaggtgtccaaatgttgattgcattgaagaatgagtggg |
54693320 |
T |
|
| Q |
213 |
tgtggtctagatggcaagctgtttgagcgaccatggaaattggattttgagttcaaaggaga |
274 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
54693321 |
tgtggtctagagggcaaactgtttgagcgaccatggaaatttgattttgtattcaaaggaga |
54693382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 509
Target Start/End: Original strand, 54693564 - 54693633
Alignment:
| Q |
440 |
agatttggattcagacataattacataaatgttagagccttgtctcccccaaggaatctccccaactcat |
509 |
Q |
| |
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||||||||| | |||||||||| |||||||||||||| |||||||| || |||| ||| ||||||||| |
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| T |
54693564 |
agatttggaattagacataattgcataaatgttagagaagtgtctccctcatggaaactctccaactcat |
54693633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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