View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_11 (Length: 451)
Name: NF14451_low_11
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 47649099 - 47648668
Alignment:
| Q |
9 |
aaaagaaaagagatggaaaaatataactacatatacgtgtgggtgaagaaatcaggataaaaacaaaattaaataattgacttaggataattagtagaca |
108 |
Q |
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| T |
47649099 |
aaaagaaaagagatagaaaaatataactatatatatgtgtgggtgaagaaatcaggataaaaacaaaattaaataattgacttaggataattagtagaca |
47649000 |
T |
|
| Q |
109 |
aaaacaa-tgttacattcgtcatagacttccacgaacctccgtttctacatattattcccttaggttaggagtagtccaaaattttcccatatctcaggg |
207 |
Q |
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|||| || |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47648999 |
aaaaaaaatgttacattcgtcatagacttccacgaaactccgtttctacatattat-cccttaggttaggagtagtccaaaattttcccatatctcaggg |
47648901 |
T |
|
| Q |
208 |
tctattaacatataattgatgactttagcatctacccaaacttattctatnnnnnnncagaagaaaactaaatcaaacttaaggacaatt-tttgttgga |
306 |
Q |
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| T |
47648900 |
tctattaacatataattgatgactttagcatctacccaaacttattctataaaaaaacagaagaaaactaaatcaaacttgaggacaattatttgttgga |
47648801 |
T |
|
| Q |
307 |
cataatgaagttaatgtatgtgtgacttgctaaattgccaatggaagtttatactttcgatatttgtg-aaatattcgatttgcctaaaacgcagctata |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47648800 |
cataatgaagttaatgtatgtgtgacttgctaaattgccaatggaagtttatactttcgatatttgtgaaaatattcgatttgcctaaaacgcagctata |
47648701 |
T |
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| Q |
406 |
ttgtcctgtttatcttttctaggaactatttga |
438 |
Q |
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| T |
47648700 |
ttgtcctgtttatcttttctaggaactatttga |
47648668 |
T |
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