View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_14 (Length: 423)
Name: NF14451_low_14
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 190 - 411
Target Start/End: Original strand, 47185600 - 47185821
Alignment:
| Q |
190 |
ttgtacattttaatcacctatagtatttggtttaattgatgttctgaaaaaacttgtattttctcttggtaaaggtcttccaacaattcaccggcatcaa |
289 |
Q |
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| T |
47185600 |
ttgtacattttaatcacctatagtatttggtttgattgatgttctgaaaaaacttgtattttctcttggtaaaggtcttccaacaattcaccggcatcaa |
47185699 |
T |
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| Q |
290 |
tgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactcatcagtgatcacaggaggtgtgaatgtcctc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47185700 |
tgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactcatcagtgatcacaggaggtgtgaatgtcctc |
47185799 |
T |
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| Q |
390 |
tgcaccttagtgtctgtatatt |
411 |
Q |
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|||||||||||||||||||||| |
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| T |
47185800 |
tgcaccttagtgtctgtatatt |
47185821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 47185203 - 47185361
Alignment:
| Q |
15 |
gtaactactattatcattcattattgatcatgaacgagttaaatgcataatacattgagattgatattttataaataaaatcataatggaaccgatgaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
47185203 |
gtaactactattatcattcattattgatcatgaacgagttaaatgcataatacattgagattgatattttataaatgagatcataatggaaccgatgaaa |
47185302 |
T |
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| Q |
115 |
cctccaaattatggttcaattagttcaactacgattgaattagaggacaaataaataat |
173 |
Q |
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| T |
47185303 |
cctccaaattattattcaattagttcaactacgattgaattagaggtcaaataaataat |
47185361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 262 - 411
Target Start/End: Original strand, 47198211 - 47198360
Alignment:
| Q |
262 |
aggtcttccaacaattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactcatc |
361 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
47198211 |
aggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactcatc |
47198310 |
T |
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| Q |
362 |
agtgatcacaggaggtgtgaatgtcctctgcaccttagtgtctgtatatt |
411 |
Q |
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| T |
47198311 |
agtgatcacaggaggtgtgaatgtcctatgcactttagtgtctgtatatt |
47198360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 47212311 - 47212396
Alignment:
| Q |
273 |
caattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactc |
358 |
Q |
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| T |
47212311 |
caattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggatttaagaatgatgctgcactttactc |
47212396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 748986 - 748904
Alignment:
| Q |
267 |
ttccaacaattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttc |
349 |
Q |
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|||||||||||||| |||||||| || |||||||| ||||| ||||| |||||||| || ||||||| | ||||||||||| |
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| T |
748986 |
ttccaacaattcacaggcatcaacgcgatcatgttttatgcaccagttttgttcaatacagtgggattcaagaatgatgcttc |
748904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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