View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_17 (Length: 385)
Name: NF14451_low_17
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 381
Target Start/End: Complemental strand, 44908477 - 44908110
Alignment:
| Q |
15 |
agaaacaaagctaaatgatgaacaagaaaagaaagattgaatatcatcgtgccaaatgtgagagctagattcaaaaaataaatctagctagccatgaatc |
114 |
Q |
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| T |
44908477 |
agaaacaaagctaaatgatgaacaagaaaagaaagattgaatatcatcgtgccaaatgtgagagctagattcaaaaaataaatctagctagccatgaatc |
44908378 |
T |
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| Q |
115 |
gataaaccatgatatgcttgtatgtctctccaggcttaacaatctgagatggaaagttaggcttattcacagaatctgggtaaccttgtgtctccaaagc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
44908377 |
gataaaccatgatatgcttgtatgtctctccaggcttaacaatctgagatggaaagttaggcttattcacagaatctgggaaaccctgtgtctccaaagc |
44908278 |
T |
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| Q |
215 |
aatgccaccatacttgtgatatgtagctccatcctttcctttagtatcagtcaacattccactagtatagtattgcaatccaacttggtttgaccacaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44908277 |
aatgccaccatacttgtgatatgtagctccatcctttcctttagtatcagtcaacattccactagtatagtattgcaatccaacttggtttgaccacaac |
44908178 |
T |
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| Q |
315 |
tccattttcc-ttcctgagacaggttctttcactatacaaaccttggttaaatgatttttaccattca |
381 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44908177 |
tccattttcctttcctgagacaggttctttcactatacaaaccttggttaaatgattttgaccattca |
44908110 |
T |
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