View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_19 (Length: 358)
Name: NF14451_low_19
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_19 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 27983405 - 27983067
Alignment:
| Q |
17 |
gaagaatgtgattccggaatgcaagacgtttcaccttgatcaagagctagtgtcatgttcaacagaagttcagttaatggagtgagagaatttggttagt |
116 |
Q |
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| T |
27983405 |
gaagaatgtgattccggaatgcaagacgtttcaccttgatcaagagctagtgtcatgttcaacagaagttcagttagtggagtgagagaatttggttagt |
27983306 |
T |
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| Q |
117 |
tttaaggttccccatcatgtaaaaattgttcaatagtatctccttttccctgttacagaaaaattgtttgtgtagatgaatatgattcccatacatacta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27983305 |
tttaaggttccccatcatgtaaaaattgttcaatagtatctccttttccctgttacagaaaaattgtttgtgtagatgaatatgattcccatacagacta |
27983206 |
T |
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| Q |
217 |
atgaaagtcatagcggtaaatactccgtggaatgtagttatggtcaatggtttaaatttcagtttttgttcattaaaatctttgacattgaaagttctat |
316 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
27983205 |
atgaaagtcatagcggta---actccgtggaatgtagttatggtcaatggtttaaatttcagtgtttgttcattaaaatccttgacattgaaagttctat |
27983109 |
T |
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| Q |
317 |
ggttaattgtatatgtggatctgagttgacacatcaaatctt |
358 |
Q |
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| T |
27983108 |
ggttgattgtatatgttgatctgagttgacacatcaaatctt |
27983067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 28040707 - 28040369
Alignment:
| Q |
17 |
gaagaatgtgattccggaatgcaagacgtttcaccttgatcaagagctagtgtcatgttcaacagaagttcagttaatggagtgagagaatttggttagt |
116 |
Q |
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| T |
28040707 |
gaagaatgtgattccggaatgcaagacgtttcaccttgatcaagagctagtgtcatgttcaacagaagttcagttagtggagtgagagaatttggttagt |
28040608 |
T |
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| Q |
117 |
tttaaggttccccatcatgtaaaaattgttcaatagtatctccttttccctgttacagaaaaattgtttgtgtagatgaatatgattcccatacatacta |
216 |
Q |
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| T |
28040607 |
tttaaggttccccatcatgtaaaaattgttcaatagtatctccttttccctgttacagaaaaattgtttgtgtagatgaatatgattcccatacagacta |
28040508 |
T |
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| Q |
217 |
atgaaagtcatagcggtaaatactccgtggaatgtagttatggtcaatggtttaaatttcagtttttgttcattaaaatctttgacattgaaagttctat |
316 |
Q |
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| T |
28040507 |
atgaaagtcatagcggta---actccgtggaatgtagttatggtcaatggtttaaatttcagtgtttgttcattaaaatccttgacattgaaagttctat |
28040411 |
T |
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| Q |
317 |
ggttaattgtatatgtggatctgagttgacacatcaaatctt |
358 |
Q |
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| T |
28040410 |
ggttgattgtatatgttgatctgagttgacacatcaaatctt |
28040369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 27238037 - 27237907
Alignment:
| Q |
128 |
ccatcatgtaaaaattgttcaatagtatctccttttccctgttacagaaaaattgtttgtgtagatgaatatgattcccatacatactaatgaaagtcat |
227 |
Q |
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||||||||||||||||| | |||||||||| ||||||| ||||||||||| ||| |||| ||||||||||||||||||||||| ||||||| |||| || |
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| T |
27238037 |
ccatcatgtaaaaattgctgaatagtatctgcttttccaggttacagaaaacttgattgtatagatgaatatgattcccatacagactaatggaagttat |
27237938 |
T |
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| Q |
228 |
agcggt-aaatactccgtggaatgtagttat |
257 |
Q |
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| T |
27237937 |
agtggtaaaatactccgtggaatgtagttat |
27237907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 27862489 - 27862446
Alignment:
| Q |
314 |
tatggttaattgtatatgtggatctgagttgacacatcaaatct |
357 |
Q |
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| T |
27862489 |
tatggttaatgatatatatggatctgagttgacacatcaaatct |
27862446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 46267530 - 46267452
Alignment:
| Q |
109 |
tggttagttttaaggttccccatcatgtaaaaattgttcaatagtatctccttttccctgttacagaaaaattgtttgtgt |
189 |
Q |
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| T |
46267530 |
tggtcagttttaaggttcccc-tcatgtaaaaagtgttgcatattatctcgttt-ccctagtacagaaaaattgtttgtgt |
46267452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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