View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_2 (Length: 733)
Name: NF14451_low_2
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_2 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 4e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 497 - 733
Target Start/End: Original strand, 50601403 - 50601640
Alignment:
| Q |
497 |
gacaaattgatattgttaagacttatggttaaaaaagcaaattttatatcataaac-annnnnnnnatactttttaaaggttgactatacaagttgttag |
595 |
Q |
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| T |
50601403 |
gacaaattgatattgttaagacttatggttaaaaaagcaaattttatatcataaacgattttttttatactttttaaaggttgactatacaagttgttag |
50601502 |
T |
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| Q |
596 |
gattttcctaacagttaatatgcctcttattcttttaaatgtctcgactttcacttttagttcctctaaaccgtttaattgaataatagctttcctaaac |
695 |
Q |
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| T |
50601503 |
gattttcttaaaagttaatatgcctcttatccttttaaatgtctcgactttcacttttagtctctctaaaacgtttaattgaataatagtcttcctaaac |
50601602 |
T |
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| Q |
696 |
ttttaggtccccacttttagtcccattgttaactaccc |
733 |
Q |
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| T |
50601603 |
ttttaagtccccaattttagtcccattgttaattaccc |
50601640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 288 - 433
Target Start/End: Original strand, 50601194 - 50601339
Alignment:
| Q |
288 |
ataaataatatatgtaaggttcggagtttgaacctcagccaccacnnnnnnngatcaacatgtaaaataattttatactatggtacacattaatgaatca |
387 |
Q |
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| T |
50601194 |
ataaataatatatgtaaggtgcgaagtttgaacctcagccaccacaataaaagatcaacatgtaaaataattttatactatggtacacattaataaatca |
50601293 |
T |
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| Q |
388 |
tatatttacttaaaatgtgtatggctatttattacaatttttgtgg |
433 |
Q |
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| T |
50601294 |
tatatttacttaaaatgtgtatggctatttattacaatttttgtgg |
50601339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 38879563 - 38879690
Alignment:
| Q |
160 |
aaggggatgtgaagatgaaaacacaatatagaaatggagagaaacatgtttgatggggtcaattaagtataagatacaccgttcgcgtgataaacacgaa |
259 |
Q |
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| T |
38879563 |
aaggggatatgaagatgaaaacacagcataaaaatggagagaaatatgtttgataaggtcaactaagcataagaaatagcattcgtgtgattagcacgaa |
38879662 |
T |
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| Q |
260 |
aaagctctcgtgctatttagcatttttc |
287 |
Q |
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| T |
38879663 |
aaagttatcgtgctatttagcatttttc |
38879690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38879383 - 38879451
Alignment:
| Q |
1 |
aagcacaaaacagatgaggggtaggtaatggcaagggatcagtgcactgtagcttaaaaagaaaagaag |
69 |
Q |
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| T |
38879383 |
aagcacaaaatagatgagaggtaggtagtggtaagggagcagagcactgtagcttaaaaagaaaagaag |
38879451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25910793 - 25910716
Alignment:
| Q |
1 |
aagcacaaaacagatgaggggtaggtaatggcaagggatcagtgcactgtagcttaaaaagaaaagaagcatgtagat |
78 |
Q |
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| T |
25910793 |
aagcacaaaacagatgagaggtaggtagtggcaagggagcagagcactgtagcttaaaaagaaaagaagcaggtagat |
25910716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 25910618 - 25910491
Alignment:
| Q |
160 |
aaggggatgtgaagatgaaaacacaatatagaaatggagagaaacatgtttgatggggtcaattaagtataagatacaccgttcgcgtgataaacacgaa |
259 |
Q |
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| T |
25910618 |
aaggggatgtgaagatgaaaacacagcataaaaatggagagaaacgtgtttgataaggtcaactaagcataagaaatagcattcgcgtgattagcacgaa |
25910519 |
T |
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| Q |
260 |
aaagctctcgtgctatttagcatttttc |
287 |
Q |
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| T |
25910518 |
aatgttatcctgctatttagcatttttc |
25910491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 26864171 - 26864102
Alignment:
| Q |
3 |
gcacaaaacagatgaggggtaggtaatggcaaggg-atcagtgcactgtagcttaaaaagaaaagaagca |
71 |
Q |
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| T |
26864171 |
gcacaaaacagatgagaggtaggtcgtggcaaggggagcagagcactgtagcttaaaaagaaaagaagca |
26864102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 331
Target Start/End: Original strand, 27270266 - 27270305
Alignment:
| Q |
292 |
ataatatatgtaaggttcggagtttgaacctcagccacca |
331 |
Q |
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| T |
27270266 |
ataatatatgcaaggttcggagttcgaacctcagccacca |
27270305 |
T |
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