View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_20 (Length: 347)
Name: NF14451_low_20
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 106 - 331
Target Start/End: Complemental strand, 53180774 - 53180543
Alignment:
| Q |
106 |
taagtttgaactttgatcatcaaagatatatgaaattctcatttaaaatagtcgagctagacaaatatttgtaactaatgagtcatatattataattaga |
205 |
Q |
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| T |
53180774 |
taagtttgaactttgatcatcaaagatatttgaaattctcatttaaaatagtcgagctagacaaatatttgtaactaatgagtcatatattataattaga |
53180675 |
T |
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| Q |
206 |
ttaaatctttttaggtgnnnnnnncccattattttgaaacataa------agttttagttttagttgtttgacctcttgatccgatccttttcaaaatta |
299 |
Q |
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| T |
53180674 |
ttaaatctttttaggtgttttttgcccattattttgaaacataaagttttagttttagttttagttgtttgacctcttgatccgatccttttcaaaatta |
53180575 |
T |
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| Q |
300 |
aatgaacaaacttttgtctcaaagtaagttct |
331 |
Q |
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| T |
53180574 |
aatgaacaaacttttgtctcaaagtaagttct |
53180543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 53184287 - 53184210
Alignment:
| Q |
1 |
aacaacgtgaacaatggtatgcttaagggattggggggcatgtatgttccaacactaatggatgaaaagtgacaaaaaa |
79 |
Q |
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| T |
53184287 |
aacaacgtgaacaatggtatgcttaagggattggggg-catgtatgttccaacactaatggatgaaaagtgataaaaaa |
53184210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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