View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_21 (Length: 338)
Name: NF14451_low_21
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 8764689 - 8764742
Alignment:
| Q |
267 |
ctcatatgaatgaaccacacttttcttgtcttttcacttctcaaactacaatgg |
320 |
Q |
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| T |
8764689 |
ctcatatgaatgaaccacacttttcttgtcttttcacttctcaaactacaatgg |
8764742 |
T |
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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 8764559 - 8764611
Alignment:
| Q |
137 |
taatggctttgccttgtacaaccagtcacgatctgaataataaactcaactac |
189 |
Q |
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| T |
8764559 |
taatggctttgccttgtacaaccagtcacgatctgaataataaactcaactac |
8764611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 8764429 - 8764485
Alignment:
| Q |
13 |
cacagacacactgccacactcaacaca--acacactattgagcttgttccttttaat |
67 |
Q |
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| T |
8764429 |
cacagacacactgccacactcaacacaacacacactattgagcttgttccttttaat |
8764485 |
T |
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