View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_22 (Length: 336)
Name: NF14451_low_22
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 139 - 287
Target Start/End: Original strand, 27982854 - 27983002
Alignment:
| Q |
139 |
cagctttaactgtttggaacaaaattaaaacctttaccacaattatttcgaccgcagcatcatgatttcaatttatctgcaacacaactttaatcaagaa |
238 |
Q |
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| T |
27982854 |
cagctttaactgtttggaacaaaattaaaacctttaccacaattatttcgaccgcagcatcatgatttcaagttatctgcaacacaactttaatcaagaa |
27982953 |
T |
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| Q |
239 |
tgtgtttagtgaacgcttttggatccacgttggatttttatgaaattgc |
287 |
Q |
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| T |
27982954 |
tgtatttagtgaacgcttttggatccacgttggatttttatgaaattgc |
27983002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 139 - 287
Target Start/End: Original strand, 28040156 - 28040304
Alignment:
| Q |
139 |
cagctttaactgtttggaacaaaattaaaacctttaccacaattatttcgaccgcagcatcatgatttcaatttatctgcaacacaactttaatcaagaa |
238 |
Q |
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| T |
28040156 |
cagctttaactgtttggaacaaaattaaaacctttaccacaattatttcgaccgcagcatcatgatttcaagttatctgcaacacaactttaatcaagaa |
28040255 |
T |
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| Q |
239 |
tgtgtttagtgaacgcttttggatccacgttggatttttatgaaattgc |
287 |
Q |
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| T |
28040256 |
tgtatttagtgaacgcttttggatccacgttggatttttatgaaattgc |
28040304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 27982749 - 27982808
Alignment:
| Q |
17 |
cacttaccacacaaaaaatgttggaaagataatatattgctatcccttttcttatttaaaa |
77 |
Q |
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| T |
27982749 |
cacttaccaca-aaaaaatgttggaaagataatatattgctatcccttttcttatctaaaa |
27982808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 28040051 - 28040110
Alignment:
| Q |
17 |
cacttaccacacaaaaaatgttggaaagataatatattgctatcccttttcttatttaaaa |
77 |
Q |
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| T |
28040051 |
cacttaccaca-aaaaaatgttggaaagataatatattgctatcccttttcttatctaaaa |
28040110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 181
Target Start/End: Original strand, 27861977 - 27862006
Alignment:
| Q |
152 |
ttggaacaaaattaaaacctttaccacaat |
181 |
Q |
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| T |
27861977 |
ttggaacaaaattaaaacctttaccacaat |
27862006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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