View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_29 (Length: 265)
Name: NF14451_low_29
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 37492422 - 37492550
Alignment:
| Q |
15 |
atgaataatagatgaatcacataatgaaattgtacagattcatttccaataatctttattgaaaaacaaagtattgaattagttgatcatcaatattaga |
114 |
Q |
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| T |
37492422 |
atgaataatagatgaatcacattatgaaattgtacatattcatttccaataatctctattgaaaaacaaagtattgaattagttgatcatcaatattaga |
37492521 |
T |
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| Q |
115 |
tgaatgtaaatatacaatggtcctcatag |
143 |
Q |
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| T |
37492522 |
tgaatgtaaatatacaatggtactcatag |
37492550 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 37492732 - 37492772
Alignment:
| Q |
225 |
gggacaaccaaaattcattttatataggaattaaactccat |
265 |
Q |
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| T |
37492732 |
gggacaaccaaaattcattttatattggaaataaactccat |
37492772 |
T |
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