View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14451_low_30 (Length: 259)

Name: NF14451_low_30
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14451_low_30
NF14451_low_30
[»] chr2 (3 HSPs)
chr2 (30-244)||(21624024-21624238)
chr2 (140-171)||(19281000-19281031)
chr2 (1-47)||(26769466-26769512)
[»] chr5 (4 HSPs)
chr5 (12-47)||(34276806-34276841)
chr5 (6-47)||(13287468-13287509)
chr5 (11-47)||(15382426-15382462)
chr5 (11-47)||(20683330-20683366)
[»] chr4 (2 HSPs)
chr4 (1-47)||(42640481-42640527)
chr4 (6-43)||(35158054-35158091)
[»] chr7 (1 HSPs)
chr7 (6-47)||(9778457-9778498)
[»] chr3 (3 HSPs)
chr3 (6-47)||(750688-750729)
chr3 (6-47)||(14027964-14028005)
chr3 (27-55)||(24633478-24633506)
[»] chr1 (2 HSPs)
chr1 (6-47)||(10577804-10577845)
chr1 (15-47)||(48548040-48548072)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 21624238 - 21624024
Alignment:
Q  30 gtgtccgtatccgtgcttaataatattacaaaccttttgattagtaaaatttgtaannnnnnnnnnnatcacagcaactcatgactgtcataatgacttg 129  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||    
T  21624238 gtgtccgtatccgggcttcataatattacaaaccttttgattagtaaaatttgtaatatttttttttatcacagcaactcatgactgtcataatgacttg 21624139  T
Q  130 gattgtggagacaaaattaagtgtgtgcctcctcggattgcagtgtgtatcaattacaaatgttattgtattcttgaaaatgatgcagtaattccttgga 229  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21624138 gattgtggagacaaaattaagtgtgtgcctcctcggattgcattatgtatcaattacaaatgttattgtattcttgaaaatgatgcggtaattccttgga 21624039  T
Q  230 gtacatgaccaaaac 244  Q
    |||||||||||||||    
T  21624038 gtacatgaccaaaac 21624024  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 171
Target Start/End: Complemental strand, 19281031 - 19281000
Alignment:
Q  140 acaaaattaagtgtgtgcctcctcggattgca 171  Q
    ||||||||||||||||||||||||||||||||    
T  19281031 acaaaattaagtgtgtgcctcctcggattgca 19281000  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26769512 - 26769466
Alignment:
Q  1 tcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    |||||||||  |||| ||||||||| |||||||||||||||||||||    
T  26769512 tcggcgtgtctgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 26769466  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 34276841 - 34276806
Alignment:
Q  12 gtgttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    |||| |||||||||||||||||||||||||||||||    
T  34276841 gtgtcgtgtccggtatccgtgtccgtatccgtgctt 34276806  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 13287468 - 13287509
Alignment:
Q  6 gtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  13287468 gtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 13287509  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 15382462 - 15382426
Alignment:
Q  11 cgtgttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  15382462 cgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 15382426  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 20683366 - 20683330
Alignment:
Q  11 cgtgttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  20683366 cgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 20683330  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42640527 - 42640481
Alignment:
Q  1 tcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    ||||||||| ||||||||||||  | |||||||||||||||||||||    
T  42640527 tcggcgtgtccgtgttgtgtccaatgtccgtgtccgtatccgtgctt 42640481  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 35158054 - 35158091
Alignment:
Q  6 gtgttcgtgttgtgtccggtatccgtgtccgtatccgt 43  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  35158054 gtgtccgtgttgtgtccggtgtccgtgtccgtatccgt 35158091  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 9778498 - 9778457
Alignment:
Q  6 gtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  9778498 gtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 9778457  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 750688 - 750729
Alignment:
Q  6 gtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  750688 gtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 750729  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 14028005 - 14027964
Alignment:
Q  6 gtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  14028005 gtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 14027964  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 24633478 - 24633506
Alignment:
Q  27 tccgtgtccgtatccgtgcttaataatat 55  Q
    |||||||||||||||||||||||||||||    
T  24633478 tccgtgtccgtatccgtgcttaataatat 24633506  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 10577804 - 10577845
Alignment:
Q  6 gtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  10577804 gtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 10577845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 48548040 - 48548072
Alignment:
Q  15 ttgtgtccggtatccgtgtccgtatccgtgctt 47  Q
    ||||||||||| |||||||||||||||||||||    
T  48548040 ttgtgtccggtgtccgtgtccgtatccgtgctt 48548072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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