View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_34 (Length: 245)
Name: NF14451_low_34
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 44141892 - 44141659
Alignment:
| Q |
9 |
gtcctgactcctgaatgcaatttatattctcgcaatgcagatatagtttattcttgctatgcttagttgaagttgttccgaccgttgcatcatcccccag |
108 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44141892 |
gtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattcttgctatgcttagttgaagatgttccgaccgttgcatcatcccccag |
44141793 |
T |
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| Q |
109 |
catagcttctcgatcttttactccatacaagtccatacatccaagaacttacaggacactgagacatgattcaagagcgccccctgcatgttctccatca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44141792 |
catagcttctcgatcttttactccatacaagtccatacatccaagaacttacaggacacagagacatgattcaagagcgccccctgcatgttctccatca |
44141693 |
T |
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| Q |
209 |
gcgcttgttcaacagcagagatcaaatatcattc |
242 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
44141692 |
gcgcttgttccacagcagagatcaaatatcattc |
44141659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 50062469 - 50062236
Alignment:
| Q |
9 |
gtcctgactcctgaatgcaatttatattctcgcaatgcagatatagtttattcttgctatgcttagttgaagttgttccgaccgttgcatcatcccccag |
108 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50062469 |
gtcctgactcctgaatacaatttatattctcacaatgcagatatagtttattctggctatgcttagttgaagatgttccgaccgttgcatcatcccccag |
50062370 |
T |
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| Q |
109 |
catagcttctcgatcttttactccatacaagtccatacatccaagaacttacaggacactgagacatgattcaagagcgccccctgcatgttctccatca |
208 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062369 |
catagcatctcgatcttttactcaatacaagtccatacatccaagaacttacaggacactgagacatgattcaagagcgccccctgcatgttctccatca |
50062270 |
T |
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| Q |
209 |
gcgcttgttcaacagcagagatcaaatatcattc |
242 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
50062269 |
gcgcttgttccacagcagagatcaaatatcattc |
50062236 |
T |
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