View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14451_low_39 (Length: 218)

Name: NF14451_low_39
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14451_low_39
NF14451_low_39
[»] scaffold0164 (1 HSPs)
scaffold0164 (1-176)||(4799-4974)
[»] chr6 (7 HSPs)
chr6 (1-193)||(19215068-19215265)
chr6 (35-171)||(13548651-13548792)
chr6 (3-91)||(31876743-31876829)
chr6 (139-192)||(7457415-7457468)
chr6 (3-86)||(18700832-18700915)
chr6 (3-87)||(7457268-7457350)
chr6 (139-192)||(31876629-31876682)
[»] chr3 (3 HSPs)
chr3 (4-196)||(6079471-6079652)
chr3 (3-200)||(11028384-11028581)
chr3 (3-94)||(11441041-11441131)
[»] scaffold0017 (1 HSPs)
scaffold0017 (7-195)||(38864-39053)
[»] chr2 (2 HSPs)
chr2 (3-120)||(24864168-24864287)
chr2 (150-192)||(13652778-13652820)
[»] chr4 (1 HSPs)
chr4 (3-192)||(51030440-51030621)
[»] chr8 (4 HSPs)
chr8 (5-192)||(21349686-21349878)
chr8 (36-91)||(40390116-40390171)
chr8 (36-91)||(29634211-29634266)
chr8 (17-86)||(23126451-23126520)
[»] scaffold0039 (1 HSPs)
scaffold0039 (36-91)||(83917-83972)
[»] chr1 (1 HSPs)
chr1 (36-91)||(48280307-48280362)
[»] chr5 (1 HSPs)
chr5 (3-86)||(40802119-40802202)
[»] chr7 (2 HSPs)
chr7 (6-109)||(26645844-26645938)
chr7 (139-192)||(26645734-26645787)


Alignment Details
Target: scaffold0164 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4974 - 4799
Alignment:
Q  1 ataatgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4974 ataatgaaacataagtaaattgtaacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaa 4875  T
Q  101 aaaataattctttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtat 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4874 aaaataattctttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtat 4799  T

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Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 19215068 - 19215265
Alignment:
Q  1 ataatgaaacataagtaaattataacatcaacttgttatctaaaacctt----tcattgtgattccaattgcacaattaatctctttagccctttgccat 96  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  19215068 ataatgaaacataagaaaattataacatcaacttgttatctaaaaccttaatttcattgtgattccaaatgcacaattaatctctttagccctttgccat 19215167  T
Q  97 tcaaaaaataatt-ctttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatgtatata 193  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  19215168 tcaaaaaataatttctttagcactttgcatctcagaagcctaaaataaagctttttacataattacttcattaaaatatattttagaacatgtatata 19215265  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 13548651 - 13548792
Alignment:
Q  35 gttatctaaaacctttcattgtgattccaattgcacaattaat---ctctttagccctttgccattcaaaaaa-taatt-ctttagcactttgcatctca 129  Q
    |||||||||||||||||||||||||| ||| ||||||||||||   ||||||||||||||||||||||||| | ||||| |||||||||||||||| |||    
T  13548651 gttatctaaaacctttcattgtgatttcaaatgcacaattaataatctctttagccctttgccattcaaaagagtaatttctttagcactttgcatttca 13548750  T
Q  130 aaagcctaaaataaagttttttacataattacttcattaaaa 171  Q
     ||||||||| ||||||||  |||||||| ||||||||||||    
T  13548751 gaagcctaaagtaaagtttgctacataatcacttcattaaaa 13548792  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 31876829 - 31876743
Alignment:
Q  3 aatgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagcccttt 91  Q
    ||||||||||||| ||||||||| ||||||  ||| ||||||||||  |||||||||||||| |||| ||||||||| |||||||||||    
T  31876829 aatgaaacataagaaaattataatatcaacccgttttctaaaacct--cattgtgattccaaatgcataattaatctttttagcccttt 31876743  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 7457415 - 7457468
Alignment:
Q  139 aataaagttttttacataattacttcattaaaatgtatttcagaacatgtatat 192  Q
    |||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||    
T  7457415 aataaagtttgttacataatcacttcgttaaagtgtatttcagaacatgtatat 7457468  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 18700832 - 18700915
Alignment:
Q  3 aatgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagc 86  Q
    |||||||| || | ||||||||| |||||    ||||| ||||| ||||||||||||||||| |||| ||||||||||||||||    
T  18700832 aatgaaacgtagggaaattataatatcaagcctttatcgaaaacttttcattgtgattccaaatgcaaaattaatctctttagc 18700915  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 7457268 - 7457350
Alignment:
Q  3 aatgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagcc 87  Q
    ||||||||||||  ||||||||| ||||||  ||| || |||||||  |||||||||||||| |||| ||||||||| |||||||    
T  7457268 aatgaaacataaaaaaattataatatcaacccgttttcgaaaacct--cattgtgattccaaatgcataattaatctttttagcc 7457350  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 31876682 - 31876629
Alignment:
Q  139 aataaagttttttacataattacttcattaaaatgtatttcagaacatgtatat 192  Q
    |||||||||| ||| ||||| ||||| ||||| |||||||||||||||||||||    
T  31876682 aataaagtttgttaaataatcacttcgttaaagtgtatttcagaacatgtatat 31876629  T

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Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 6079652 - 6079471
Alignment:
Q  4 atgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaa 103  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6079652 atgaaacataagaaaattataacatcaacttgttatctgaaacctttcattttgattccaaatgcacaattaatctctttagccctttgccattcaaaaa 6079553  T
Q  104 ataattctttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatatat 196  Q
    ||||           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6079552 ataa-----------tttgcatctcaaaggcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatatatatatat 6079471  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 11028384 - 11028581
Alignment:
Q  3 aatgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaa 102  Q
    ||||| || |||| ||||||||| |||| | |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11028384 aatgatacttaagaaaattataatatcatcctgttatctaaaaccttacattgtgattccaaatgcacaattaatctctttagccctttgccattcaaaa 11028483  T
Q  103 aataa-ttctttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatatatttac 200  Q
    ||||| |||| ||||||||||| | |        ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||    
T  11028484 aataatttctctagcactttgcttgt-tttcttttaaaataaagtttgttacataatcacttaattaaaatgtatttcagaacatgtatataaatttac 11028581  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 11441131 - 11441041
Alignment:
Q  3 aatgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgcc 94  Q
    ||||||| ||||| ||||||||| ||||||  |||||||||||| ||||| | ||||||||| | ||| |||||||||||||||||||||||    
T  11441131 aatgaaatataagaaaattataatatcaacccgttatctaaaacttttcactctgattccaa-tacacgattaatctctttagccctttgcc 11441041  T

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Target: scaffold0017 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 38864 - 39053
Alignment:
Q  7 aaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaaata 106  Q
    |||| |||| ||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||||||| |||||||| | | |||||||||||| ||||    
T  38864 aaacttaagaaaattataatatcaacttgttatttaaaatctttcattgtgattccaaatgcacaattattctctttatctcgttgccattcaaagaata 38963  T
Q  107 a-ttctttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatata 195  Q
    | ||||||||||| |||||| | | |||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  38964 atttctttagcaccttgcatttgagaagcctaaaataaagtttgttacataatcacttcattaaaatatatttcaaaacatgtatatata 39053  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 24864168 - 24864287
Alignment:
Q  3 aatgaaacataagtaaattataacatcaa-cttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaa 101  Q
    ||||||||||||| ||||||||| ||||| | | ||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||| | || |||    
T  24864168 aatgaaacataaggaaattataatatcaagccttttatctaaaacttttctttgtgattccaaatgcacaattaatctctttagcactttgtcgttaaaa 24864267  T
Q  102 aaataat-tctttagcactt 120  Q
    ||| ||| |||||| |||||    
T  24864268 aaacaatctctttaacactt 24864287  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 13652778 - 13652820
Alignment:
Q  150 ttacataattacttcattaaaatgtatttcagaacatgtatat 192  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  13652778 ttacataatcacttcattaaactgtatttcagaacatgtatat 13652820  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 51030440 - 51030621
Alignment:
Q  3 aatgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaa 102  Q
    ||||||||||||| ||||||||| ||||||  ||| ||||||||||||         ||||| |||| ||||||||| ||||||| |||   ||||||||    
T  51030440 aatgaaacataagaaaattataatatcaacccgttttctaaaaccttt---------tccaaatgcataattaatctttttagcctttttatattcaaaa 51030530  T
Q  103 aataatt-ctttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatgtatat 192  Q
    ||||||| ||||| ||||||  || |||  ||| || |||||||||| ||||||||| ||||| | ||| |||||||||||||||||||||    
T  51030531 aataatttctttaacactttttatttcattagcatagaataaagtttgttacataatcacttcgtcaaagtgtatttcagaacatgtatat 51030621  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 21349686 - 21349878
Alignment:
Q  5 tgaaacataagtaaattataacatcaacttgttat--ctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaa 102  Q
    ||||||||||| || |||||| ||||||  |||||  || |||| ||||  ||||||| ||| | ||| |||||||| |||||||||||||| || ||||    
T  21349686 tgaaacataagaaatttataatatcaacccgttatatcttaaacatttcgctgtgatttcaaatacaccattaatctatttagccctttgcccttgaaaa 21349785  T
Q  103 aataa-ttctttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaa--atgtatttcagaacatgtatat 192  Q
    ||||| |||||||  ||||||||| | | ||| |||||||||| ||| ||||||| | ||||||| |||  || |||| ||||||||||||||    
T  21349786 aataatttctttaaaactttgcatttaagaagtctaaaataaaatttgttacatagtcacttcatcaaaatatatattccagaacatgtatat 21349878  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 40390171 - 40390116
Alignment:
Q  36 ttatctaaaacctttcattgtgattccaattgcacaattaatctctttagcccttt 91  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  40390171 ttatctaaaacatttcattgtgattccaaatgcacaattaatctctttagcgcttt 40390116  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 29634266 - 29634211
Alignment:
Q  36 ttatctaaaacctttcattgtgattccaattgcacaattaatctctttagcccttt 91  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||    
T  29634266 ttatctaaaacatttcattgtgattcaaaatgcacaattaatctctttagcgcttt 29634211  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 23126520 - 23126451
Alignment:
Q  17 aaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagc 86  Q
    ||||||||| ||||| |  ||||| ||||| ||||||||||||||||| |||| ||||||||||||||||    
T  23126520 aaattataatatcaagtctttatcgaaaacttttcattgtgattccaaatgcaaaattaatctctttagc 23126451  T

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Target: scaffold0039 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 83972 - 83917
Alignment:
Q  36 ttatctaaaacctttcattgtgattccaattgcacaattaatctctttagcccttt 91  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  83972 ttatctaaaacatttcattgtgattccaaatgcacaattaatctctttagcgcttt 83917  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 48280362 - 48280307
Alignment:
Q  36 ttatctaaaacctttcattgtgattccaattgcacaattaatctctttagcccttt 91  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  48280362 ttatctaaaacatttcattgtgattccaaatgcacaattaatctctttagcgcttt 48280307  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 40802202 - 40802119
Alignment:
Q  3 aatgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagc 86  Q
    |||||||| || | ||||||||| ||||| |  ||||| ||||| ||||||||||||||||| || | ||||||||||||||||    
T  40802202 aatgaaacgtagggaaattataatatcaagtctttatcaaaaacttttcattgtgattccaaatgtaaaattaatctctttagc 40802119  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 26645938 - 26645844
Alignment:
Q  6 gaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaaat 105  Q
    |||||||||| ||||||||| |||||| |||| |||||||||||         |||||| |||| ||||||||| |||||||||||   |||||||||||    
T  26645938 gaaacataagaaaattataatatcaacatgttttctaaaacctt---------ttccaaatgcataattaatctttttagcccttttatattcaaaaaat 26645848  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 26645787 - 26645734
Alignment:
Q  139 aataaagttttttacataattacttcattaaaatgtatttcagaacatgtatat 192  Q
    |||||||||| ||||||||| ||||| | ||| ||||||||||| |||||||||    
T  26645787 aataaagtttgttacataatcacttcgtcaaagtgtatttcagatcatgtatat 26645734  T

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