View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_6 (Length: 634)
Name: NF14451_low_6
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 10 - 616
Target Start/End: Original strand, 49690484 - 49691090
Alignment:
| Q |
10 |
aagaatatatttatgtcgtgcaaattaaaagtgtggaacaaattgtttaacacaattgaatggctttagtttatgttttacattttaggttccttttgtt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49690484 |
aagaatatatttatgtcgtgcaaattaaaagtgtggaacaaattgtttaacacaattgaatggctttagtttatgttttacattttaggttccttttgtt |
49690583 |
T |
|
| Q |
110 |
ctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggttt |
209 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||| |
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| T |
49690584 |
ctctcatttgactgtgttactgctacttgtcttaactaggaaaggaaatggacacagtggtgattgtccagactcatttggttgtggaaatcttgggttt |
49690683 |
T |
|
| Q |
210 |
cttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49690684 |
tttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagt |
49690783 |
T |
|
| Q |
310 |
taatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagctttt |
409 |
Q |
| |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49690784 |
taaccaaaagaggaaaactcttccaagttaaaaagattgataatcactggtccattggcaacactatttccattattgaccccaatatcaccaagctttt |
49690883 |
T |
|
| Q |
410 |
ggagaaaaatgcttgtgaggcattcagctatgttaatattaccctccctcctcccactccttttggaacnnnnnnnatgaaaaactatataacagctttc |
509 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
49690884 |
ggagaaaaatgcttgtgaggcattcagctatgttaatattaccctccctcctcccactccttttggaactttttttatgaaaaactacataacagctttc |
49690983 |
T |
|
| Q |
510 |
aaatgcaaccatacccgaaagttaggcattcgccctccaagtaatttcttcataaatagttcttgtcatccctatgatttttacttcggtgattcaatat |
609 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
49690984 |
aaatgcaaccatacccgaaaattaggcattcaccctccaagtaatttcttcataaatagttcttgtcatccctatgatttttactttggcgattcaatat |
49691083 |
T |
|
| Q |
610 |
ttgatga |
616 |
Q |
| |
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||||||| |
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| T |
49691084 |
ttgatga |
49691090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 102 - 616
Target Start/End: Original strand, 49678949 - 49679456
Alignment:
| Q |
102 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtc |
201 |
Q |
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| T |
49678949 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaa--- |
49679045 |
T |
|
| Q |
202 |
ttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagta |
301 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49679046 |
-----ttgattaaatacccttttacaacagttgaattcccaagctgtggtacattggcaattcaaggttgtgataatctcaacaaaactgctatgaagca |
49679140 |
T |
|
| Q |
302 |
tgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcacc |
401 |
Q |
| |
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|||||||||| |||| | ||||||||||| ||||||| ||| |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49679141 |
cgtccagttaaccaaaggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcacc |
49679240 |
T |
|
| Q |
402 |
aagcttttggagaaaaatgcttgtgaggcattcagctatgttaatattaccctccctcctcccactccttttggaac-nnnnnnnatgaaaaactatata |
500 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |||| || ||||||||||||| ||||||||||| ||| |
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| T |
49679241 |
aagcttttggagaagaatgcttgtgaggcattcagccatgttaatattacactccttccttcctctccttttggaacttttttttatgaaaaactacata |
49679340 |
T |
|
| Q |
501 |
acagctttcaaatgcaaccatacccgaaagttaggcattcgccctccaagtaatttcttcataaatagttcttgtcatccctatgatttttacttcggtg |
600 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | |
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| T |
49679341 |
acagctttcaaatgcaaccgtacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatgatttttactttggcg |
49679440 |
T |
|
| Q |
601 |
attcaatatttgatga |
616 |
Q |
| |
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|||||||||||||||| |
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| T |
49679441 |
attcaatatttgatga |
49679456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 606
Target Start/End: Original strand, 49686236 - 49686811
Alignment:
| Q |
14 |
atatatttatgtcgtgcaaattaa-aagtgtggaacaaattgtttaacacaattgaatggctttagtttatgttttacattttaggttccttttgttctc |
112 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||| |||| ||| | |||||| ||||| ||| ||||| ||||||||||| |
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| T |
49686236 |
atatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaacagaataggatggctctagttcatgcactacat---------cttttgttctc |
49686326 |
T |
|
| Q |
113 |
tcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggtttctt |
212 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || |
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| T |
49686327 |
tcatttgactgtgttactgctacttgtcttaactagtaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaaatcttggattggtt |
49686426 |
T |
|
| Q |
213 |
aaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaa |
312 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||| | |
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| T |
49686427 |
ggctacccttttaccacagttgaattcccaaactgtggtgcattggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagttta |
49686526 |
T |
|
| Q |
313 |
tcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttgga |
412 |
Q |
| |
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|||| | ||||||| ||| ||||||| ||| ||| | ||| | || | |||| ||||||||||| |||| | ||| |||||||||||||| | |
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| T |
49686527 |
ccaaaggaggaaaacactttcaagttacaaacattaaaaatgagcggcc------caacactatttccattgttgatctgaatttcaccaagcttttgca |
49686620 |
T |
|
| Q |
413 |
gaaaaatgcttgtgaggcattcagctatgttaatattaccctccctcctcccactccttttggaacnnnnnnnatgaaaaactatataacagctttcaaa |
512 |
Q |
| |
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|||||||||||| ||||| || ||||||| |||| || |||||||||||| ||||||||||||| |||||| || | ||||||||||||||| |
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| T |
49686621 |
gaaaaatgcttgcgaggcctttagctatg---atatcactctccctcctccctctccttttggaactttttatatgaaagacaacataacagctttcaaa |
49686717 |
T |
|
| Q |
513 |
tgcaaccatacccgaaagttaggcattcgccctccaagtaatttcttcataaatagttcttgtcatccctatgatttttacttcggtgattcaa |
606 |
Q |
| |
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|||| |||||||| ||| |||| || ||| |||| ||||||||||| ||||||| | |||| || |||||||||||||||||||||||||| |
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| T |
49686718 |
tgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattcaa |
49686811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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