View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14451_low_7 (Length: 594)
Name: NF14451_low_7
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14451_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 54984752 - 54984473
Alignment:
| Q |
18 |
agaaaatcatagaaagatacagcacatccattttgtggtgtacttcagaagccacaacacacattttatttggttttcattctcttacatttcacaattt |
117 |
Q |
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| T |
54984752 |
agaaaattatagaaagatacagcacttccattttgtggtgtacttcagaagccacaacacacattttatttggttttcattctcttacatttcacaattt |
54984653 |
T |
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| Q |
118 |
gnnnnnnncaacaataaatttattaatgatcaaatctttgcacacaacgaactaaaactggaaagacaaaaagtacataacaacttgcaccaaaggagga |
217 |
Q |
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| T |
54984652 |
gttttttt-aacaataaatttattaatgatcaaatctttgcatacgacgaactaaaactggaaagataaaaagtacataacaacttgcgccaaaggagga |
54984554 |
T |
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| Q |
218 |
gcatccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggtaccaccaacacgaa |
298 |
Q |
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| T |
54984553 |
gcatccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggtaccaccaacacgaa |
54984473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 360 - 587
Target Start/End: Complemental strand, 54984411 - 54984184
Alignment:
| Q |
360 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtagggagaaatctttggatacaaaatagcataatctttcaca |
459 |
Q |
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| T |
54984411 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtaaggagaaatctttggatacaaaatagcataatctttcaca |
54984312 |
T |
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| Q |
460 |
gttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataactactgtgagccttt |
559 |
Q |
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| T |
54984311 |
gttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataactactgtgagccttt |
54984212 |
T |
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| Q |
560 |
ccttttctgaatctaccactgctctgtg |
587 |
Q |
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| T |
54984211 |
ccttttctgaatctaccactgctctgtg |
54984184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 51065490 - 51065545
Alignment:
| Q |
219 |
catccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactca |
275 |
Q |
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| T |
51065490 |
catccaaaagaaaattcaaacaccatgcaatataaacactgat-aaaacacgactca |
51065545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 443 - 587
Target Start/End: Original strand, 31320337 - 31320481
Alignment:
| Q |
443 |
tagcataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcat |
542 |
Q |
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| T |
31320337 |
tagcataatcttttactggtttgtataatactggccttgactcgttcactagtttgtcaatcggttgaatctctttctctgaatttgggcggcaaaacat |
31320436 |
T |
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| Q |
543 |
aactactgtgagcctttccttttctgaatctaccactgctctgtg |
587 |
Q |
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| | |||| |||||||||| |||||| || ||||||| ||||||| |
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| T |
31320437 |
agcaactgagagcctttccctttctgcatttaccactactctgtg |
31320481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 447 - 587
Target Start/End: Original strand, 31326377 - 31326517
Alignment:
| Q |
447 |
ataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataact |
546 |
Q |
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||||||||| || | | ||||| ||| |||||||||||| ||||||||||||||||| |||| | ||||||||| |||| |||||| ||| |||| || |
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| T |
31326377 |
ataatcttttactggtctgtatgataatggccttgactcgttcactagtttgtcaatcggttgaatctctttctccgaatctgggcggcataacatagct |
31326476 |
T |
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| Q |
547 |
actgtgagcctttccttttctgaatctaccactgctctgtg |
587 |
Q |
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|||| ||||||| |||||||| || ||||||||||||||| |
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| T |
31326477 |
actgagagccttgccttttcttcatttaccactgctctgtg |
31326517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 31320213 - 31320256
Alignment:
| Q |
70 |
cacaacacacattttatttggttttcattctcttacatttcaca |
113 |
Q |
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| T |
31320213 |
cacaacacacattttatttcgttttcattctctttcatctcaca |
31320256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 31326250 - 31326283
Alignment:
| Q |
70 |
cacaacacacattttatttggttttcattctctt |
103 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
31326250 |
cacaacacacattttatttcgttttcattctctt |
31326283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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