View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14451_low_9 (Length: 541)

Name: NF14451_low_9
Description: NF14451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14451_low_9
NF14451_low_9
[»] chr5 (5 HSPs)
chr5 (16-376)||(27771981-27772341)
chr5 (430-522)||(27771837-27771929)
chr5 (95-167)||(1335662-1335734)
chr5 (220-260)||(22566504-22566544)
chr5 (131-187)||(25021048-25021104)
[»] chr1 (3 HSPs)
chr1 (89-181)||(32854668-32854760)
chr1 (97-172)||(34911495-34911570)
chr1 (94-168)||(37047463-37047537)
[»] chr7 (2 HSPs)
chr7 (94-173)||(41462728-41462807)
chr7 (216-260)||(37437757-37437801)
[»] chr6 (7 HSPs)
chr6 (92-174)||(33980577-33980659)
chr6 (216-260)||(27827333-27827377)
chr6 (216-260)||(27831911-27831955)
chr6 (138-188)||(5959789-5959839)
chr6 (218-260)||(27827303-27827345)
chr6 (218-260)||(27831881-27831923)
chr6 (136-173)||(33973113-33973150)
[»] chr8 (1 HSPs)
chr8 (137-172)||(12119932-12119967)
[»] chr4 (2 HSPs)
chr4 (97-174)||(21867832-21867909)
chr4 (97-174)||(21923693-21923770)


Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 27772341 - 27771981
Alignment:
Q  16 ctataacatacaaccaccggttcacacaaacaaaacatacactgtgttcaaaattgagcctttggagcaccacaatcaggtaaacaaccattttggtccc 115  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27772341 ctataacatccacccaccagttcacacaaacaaaacatacactgtgttcaaaattgagcgtttggagcaccacaatcaggtaaacaaccattttggtccc 27772242  T
Q  116 tgaaggtgtgaaacattgttattatagtccctgaatgtatcgaaattgcaaatacatcctcaattgtttctttagttactcattatgacccgcaaatgcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27772241 tgaaggtgtgaaacattgttattatagtccctgaatgtatcgaaattgcaaatacatcctctattgtttctttagttactcattatgacccgcaaatgcc 27772142  T
Q  216 caaatgtgtctttagttactcattttggtcctcaaatgtgtttttgttaggcaattagtttgcaattttgacacgttcaaggactataatgatagcgact 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27772141 caaatgtgtctttagttactcattttggtcctcaaatgtgtttttgttaggcaattagtttgcaattttgacacgttcaaggactataatgatagcgact 27772042  T
Q  316 caaacattcaggaccaaaatgaccatttaccctaccgcaatccctaattccaaattaatta 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27772041 caaacattcaggaccaaaatgaccatttaccctaccgcaatccctaattccaaattaatta 27771981  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 430 - 522
Target Start/End: Complemental strand, 27771929 - 27771837
Alignment:
Q  430 ttacctgagccgaattcataatatgatctcccaaatatatctcctacaaatacaaaaccctacatttgacaaacattgatcaaaacggcaatg 522  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27771929 ttacctgagccgaattcatattatgatctcccaaatatatctcctacaaatacaaaaccctacatttgacaaacattgatcaaaacggcaatg 27771837  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 1335734 - 1335662
Alignment:
Q  95 gtaaacaaccattttggtccctgaaggtgtgaaacattgttattatagtccctgaatgtatcgaaattgcaaa 167  Q
    |||||||  |||||||||  ||||| |||||  ||||||| ||| |||||||||||||||||||| |||||||    
T  1335734 gtaaacagtcattttggttgctgaatgtgtgcgacattgtcattttagtccctgaatgtatcgaatttgcaaa 1335662  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 22566504 - 22566544
Alignment:
Q  220 tgtgtctttagttactcattttggtcctcaaatgtgttttt 260  Q
    ||||||||  |||| ||||||||||||||||||||||||||    
T  22566504 tgtgtcttgggttagtcattttggtcctcaaatgtgttttt 22566544  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 25021048 - 25021104
Alignment:
Q  131 ttgttattatagtccctgaatgtatcgaaattgcaaatacatcctcaattgtttctt 187  Q
    |||| ||||||||||||||||||||| |||||||||  ||||| |||| ||| ||||    
T  25021048 ttgtcattatagtccctgaatgtatcaaaattgcaagcacatcttcaagtgtatctt 25021104  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 32854760 - 32854668
Alignment:
Q  89 aatcaggtaaacaaccattttggtccctgaaggtgtgaaacattgttattatagtccctgaatgtatcgaaattgcaaatacatcctcaattg 181  Q
    |||||||||||||||||||||||| || ||| |||| | ||| ||| |||||||||| |||||||||| || ||||||||  ||||| |||||    
T  32854760 aatcaggtaaacaaccattttggtaccggaatgtgtaagacactgtcattatagtccttgaatgtatcaaagttgcaaatgtatccttaattg 32854668  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 34911495 - 34911570
Alignment:
Q  97 aaacaaccattttggtccctgaaggtgtgaaacattgttattatagtccctgaatgtatcgaaattgcaaatacat 172  Q
    |||| |||||||| ||||||||| |||||| ||| ||| | |||||||||| ||||||||||| | ||||| ||||    
T  34911495 aaacgaccattttagtccctgaatgtgtgatacactgtcactatagtccctaaatgtatcgaagtcgcaaacacat 34911570  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 37047537 - 37047463
Alignment:
Q  94 ggtaaacaaccattttggtccctgaaggtgtgaaacattgttattatagtccctgaatgtatcgaaattgcaaat 168  Q
    |||||||||  |||||| ||||| || |||||| |  |||| |||||||||| |||||||||||||| |||||||    
T  37047537 ggtaaacaattattttgttccctaaatgtgtgagatgttgtcattatagtccttgaatgtatcgaaactgcaaat 37047463  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 41462807 - 41462728
Alignment:
Q  94 ggtaaacaaccattttggtccctgaaggtgtgaaacattgttattatagtccctgaatgtatcgaaattgcaaatacatc 173  Q
    ||||||||||||||||||||  | || ||||||  | |||| ||||||||||||||||||||| ||||| | ||||||||    
T  41462807 ggtaaacaaccattttggtctttcaatgtgtgacgcgttgtcattatagtccctgaatgtatcaaaattaccaatacatc 41462728  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 37437757 - 37437801
Alignment:
Q  216 caaatgtgtctttagttactcattttggtcctcaaatgtgttttt 260  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||    
T  37437757 caaatgtgtcttttgttagtcactttggtcctcaaatgtgttttt 37437801  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 33980659 - 33980577
Alignment:
Q  92 caggtaaacaaccattttggtccctgaaggtgtgaaacattgttattatagtccctgaatgtatcgaaattgcaaatacatcc 174  Q
    ||||||||||| ||||||||||| |||| |||| | |||  || | |||||||||||||||||| |||||| |||| ||||||    
T  33980659 caggtaaacaatcattttggtccatgaaagtgtcagacacggtcaatatagtccctgaatgtattgaaattacaaacacatcc 33980577  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 27827333 - 27827377
Alignment:
Q  216 caaatgtgtctttagttactcattttggtcctcaaatgtgttttt 260  Q
    ||||||||| |||||||| |||||||||| |||||||||||||||    
T  27827333 caaatgtgtttttagttagtcattttggttctcaaatgtgttttt 27827377  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 27831911 - 27831955
Alignment:
Q  216 caaatgtgtctttagttactcattttggtcctcaaatgtgttttt 260  Q
    ||||||||| |||||||| |||||||||| |||||||||||||||    
T  27831911 caaatgtgtttttagttagtcattttggttctcaaatgtgttttt 27831955  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 5959839 - 5959789
Alignment:
Q  138 tatagtccctgaatgtatcgaaattgcaaatacatcctcaattgtttcttt 188  Q
    ||||||||  ||||||||||||||||||||||||||| ||| ||| |||||    
T  5959839 tatagtcctagaatgtatcgaaattgcaaatacatccacaaatgtctcttt 5959789  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 27827303 - 27827345
Alignment:
Q  218 aatgtgtctttagttactcattttggtcctcaaatgtgttttt 260  Q
    ||||| |||||||||| |||||||| |||||||||||||||||    
T  27827303 aatgtttctttagttagtcattttgatcctcaaatgtgttttt 27827345  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 27831881 - 27831923
Alignment:
Q  218 aatgtgtctttagttactcattttggtcctcaaatgtgttttt 260  Q
    ||||| |||||||||| |||||||| |||||||||||||||||    
T  27831881 aatgtttctttagttagtcattttgatcctcaaatgtgttttt 27831923  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 33973150 - 33973113
Alignment:
Q  136 attatagtccctgaatgtatcgaaattgcaaatacatc 173  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  33973150 attatagtccctgaatgtattgaaattgcaaacacatc 33973113  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 12119932 - 12119967
Alignment:
Q  137 ttatagtccctgaatgtatcgaaattgcaaatacat 172  Q
    |||||||| |||||||||||||||||||||||||||    
T  12119932 ttatagtctctgaatgtatcgaaattgcaaatacat 12119967  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 21867909 - 21867832
Alignment:
Q  97 aaacaaccattttggtccctgaaggtgtgaaacattgttattatagtccctgaatgtatcgaaattgcaaatacatcc 174  Q
    ||||||||||||||||||||||| || |||  | |||| | ||| |||||| || |||| ||||||||||| ||||||    
T  21867909 aaacaaccattttggtccctgaatgtttgaggcgttgtcactatggtccctaaacgtattgaaattgcaaacacatcc 21867832  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 21923770 - 21923693
Alignment:
Q  97 aaacaaccattttggtccctgaaggtgtgaaacattgttattatagtccctgaatgtatcgaaattgcaaatacatcc 174  Q
    ||||||||||||||||||||||| || |||  | |||| | ||| |||||| || |||| ||||||||||| ||||||    
T  21923770 aaacaaccattttggtccctgaatgtttgaggcgttgtcactatggtccctaaacgtattgaaattgcaaacacatcc 21923693  T

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