View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14452_high_4 (Length: 277)
Name: NF14452_high_4
Description: NF14452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14452_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 39990565 - 39990304
Alignment:
| Q |
1 |
aatatggtcccatagaaacataaaaggcataagctggtcgttgtcaattttatggaaaaagagactaaagcttacacatgtagaaggtatgggccagcat |
100 |
Q |
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| T |
39990565 |
aatatggtcccatagaaacataaaaggcataagctggtcgttgtcaattttatggaaaaagagactaaagcttacacatgtagaaggtatgggccagcat |
39990466 |
T |
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| Q |
101 |
gcatcaaactaactttaaaaatacactaaagcaaagcaattatattgttttataac-tgagggtgggaaaaggtgcaaaagtgaagagttgatatgttat |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39990465 |
gcataaaactaactttaaaaatacactaaagcaaagcaattatattgttttataacttgagggtgggaaaaggtgcaaaagtgaagagttgatatgttat |
39990366 |
T |
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| Q |
200 |
gttagaggaggcaaataccatcacaatttttagatatgcaacaatcccttaaaagatgtacc |
261 |
Q |
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| T |
39990365 |
gttagaggaggcaaataccatcacaatttttagatatgcaacaaccccttaaaagatgtacc |
39990304 |
T |
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