View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14452_high_7 (Length: 243)
Name: NF14452_high_7
Description: NF14452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14452_high_7 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 36575359 - 36575609
Alignment:
| Q |
10 |
gatgacgtgaatgtgttatgtttttagaaaatcagaaaaacaaacagggaagtaattgggtaattgataagcaaattgtacttaatttcttcaatt---- |
105 |
Q |
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| T |
36575359 |
gatgacgtgaatgtgttatgtttttagaaaatcagaaaaacaaacagggaagtaattgggtaattgataagcaaattgtacttaatttcttcaatttaac |
36575458 |
T |
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| Q |
106 |
---------------taacagtacaattgaaaaatggaatgctaatacatgaatttggcagagccaattgaagaatgaaggtacaaatatactaagaaga |
190 |
Q |
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| T |
36575459 |
agtacaattgaaatttaacagtacaattgaaaaatggaatgctaatacatgaatttggcagagccaattgaagaatgaaggtacaaatagactaagaaga |
36575558 |
T |
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| Q |
191 |
aaacactaagctcagagagagaggaagagacttgcttttcatccaaaatattc |
243 |
Q |
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| T |
36575559 |
aaacactaagctcagagagaga--aagagacttgattttcatccaaaatattc |
36575609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 1045555 - 1045804
Alignment:
| Q |
10 |
gatgacgtgaatgtgttatgtttttagaaaatcagaaaaacaaacagggaagtaattgggtaattgataagcaaattgtacttaatttcttcaatt---- |
105 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1045555 |
gatgacgtgaatgtgttatgtttt-agaaaatcagaaaaacaaacagggaagtaattgggtaattgataagcaaattgtacttaatttcttcaatttaac |
1045653 |
T |
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| Q |
106 |
---------------taacagtacaattgaaaaatggaatgctaatacatgaatttggcagagccaattgaagaatgaaggtacaaatatactaagaaga |
190 |
Q |
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| T |
1045654 |
agtacaattgaaatttaacagtacaattgaaaaatggaatgctaatacatgaatttggcagagccaattgaagaatgaaggtacaaatagactaagaaga |
1045753 |
T |
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| Q |
191 |
aaacactaagctcagagagagaggaagagacttgcttttcatccaaaatattc |
243 |
Q |
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| T |
1045754 |
aaacactaagctcagagagata--aagagacttgattttcatccaaaatattc |
1045804 |
T |
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