View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14452_low_2 (Length: 390)
Name: NF14452_low_2
Description: NF14452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14452_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 33423829 - 33424196
Alignment:
| Q |
7 |
aatatcgtcgtttgtcaggttgaattgggtcttacgaacaatatgattgtggatctcaattgagtcgctttctcttgggtcttatacaaca---tggatt |
103 |
Q |
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| T |
33423829 |
aatatcgtcgtttgtcaggttgaattgggtcttacgaacaatatgattgtggatctcaattgagtcgctttctcttgggtcttatacaacaatatggatt |
33423928 |
T |
|
| Q |
104 |
aagttgaactaagaagcaagcaaacattttgtataataaattattaatgaaagttcgagttacaatctgatttgaaagaactcatgcacaaaccaaaaca |
203 |
Q |
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| T |
33423929 |
aagttgaactaagaagcaagcaaacattttgtataataaattattaatgaaagttagagttacaatctgatttgaaagaactcatgcacaaaccaaaaca |
33424028 |
T |
|
| Q |
204 |
taacaggatataaaattgaggaccaaattacaatgacattaacataaataaccatataattcataatttaaaaaattcaaacaaatatggcaatgtatct |
303 |
Q |
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| T |
33424029 |
taacaggatataaaattgaggaccaaattacaatgacattaacataaataaccatataattcataattcaaaaaattcaaataaatatggcaatgtatct |
33424128 |
T |
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| Q |
304 |
tgccaaaagattaacacaaatacttgtattaataacaatataaaacttcctaattctcttatgcaaag |
371 |
Q |
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| T |
33424129 |
tgccaaaagattaacacaaatacttgtattaataacaatataaagcttcctaagtctctcatgcaaag |
33424196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 93 - 371
Target Start/End: Original strand, 33410019 - 33410294
Alignment:
| Q |
93 |
caacatggattaagttgaactaagaagcaagcaaacattttgtataataaattattaatgaaagttcgagttacaatctgatttgaaagaa-ctcatgca |
191 |
Q |
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| T |
33410019 |
caacatggataaa-ttgaaataagaagtaagctaacacttttaataacaaattcttaatgaatgggagagttacaatctgatttgaaggaaactcgagaa |
33410117 |
T |
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| Q |
192 |
caaaccaaaacataacaggatataaaattgaggaccaaattacaatgac----attaacataaataaccatataattcataatttaaaaaattcaaacaa |
287 |
Q |
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| T |
33410118 |
caaaccaaaacataacaagatataaaattgaggatcaaattacaatgactttaattaacataaataatcatataattca-------aaaaattcaaacaa |
33410210 |
T |
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| Q |
288 |
atatggcaatgtatcttgccaaaagattaacacaaatacttgtattaataacaatataaaacttcctaattctcttatgcaaag |
371 |
Q |
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| T |
33410211 |
atatagcaatatatattgccaaaagattaacacaaatacttgtattaataacaatataaagcttcctaagtctctcatgcaaag |
33410294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 371
Target Start/End: Original strand, 33415966 - 33416143
Alignment:
| Q |
197 |
caaaacataacaggatataaaattgaggaccaaattacaatgacattaacataaataaccatata--attcat-aatttaaaaaattcaaacaaatatgg |
293 |
Q |
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|||| ||||||| ||||||||| || ||| | | ||||||| |||||||||||| || |||||| |||||| |||| ||||||||||||||||||| | |
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| T |
33415966 |
caaagcataacaagatataaaactgtggatctagttacaatatcattaacataaagaatcatatataattcattaattcaaaaaattcaaacaaatatag |
33416065 |
T |
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| Q |
294 |
caatgtatcttgccaaaagattaacacaaatacttgtattaataacaatataaaacttcctaattctcttatgcaaag |
371 |
Q |
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| T |
33416066 |
caatatatattgccaagaggttaacacaaacttctgtattaataacaatataaaacttcctaagtctctcatgcaaag |
33416143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 33415854 - 33415913
Alignment:
| Q |
73 |
gctttctcttgggtcttatacaacatggattaagttgaactaagaagcaagcaaacatttt |
133 |
Q |
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| T |
33415854 |
gctttctcttgggtcttttgca-catggataaagttgaactaagaagtaaggaaacatttt |
33415913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 33428457 - 33428404
Alignment:
| Q |
303 |
ttgccaaaagattaacacaaatacttgtattaataacaatataaaacttcctaa |
356 |
Q |
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||||||| || |||||||||| |||||||||| ||||||||||| |||||||| |
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| T |
33428457 |
ttgccaagaggttaacacaaactcttgtattaaaaacaatataaagcttcctaa |
33428404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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