View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14452_low_5 (Length: 277)
Name: NF14452_low_5
Description: NF14452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14452_low_5 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 148278 - 148521
Alignment:
| Q |
15 |
ggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatgaaaaaaccagaattattatctcctagattgccacatttc |
114 |
Q |
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| T |
148278 |
ggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatgaacaaaccagaattattatctcctagattgccacatttc |
148377 |
T |
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| Q |
115 |
atccaagtaggggatgatattaacctccacatgagatgtattgcagcaattgtaggagaatttaaatggaaaaaagcgatagcaatttatgaacttaata |
214 |
Q |
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| T |
148378 |
atccaagtaggggatgatattaacctccacatgagatgtattgcagcaattgtaggagaatttaaatggaaaaaagtgatagtaatttattaacttaata |
148477 |
T |
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| Q |
215 |
atgatttttcctctgatccaggaatactacttagcctctcttat |
258 |
Q |
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| T |
148478 |
atgatttttcctctgatccagaaatactacttagcctctcttat |
148521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 139669 - 139912
Alignment:
| Q |
15 |
ggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatgaaaaaaccagaattattatctcctagattgccacatttc |
114 |
Q |
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| T |
139669 |
ggcaagtgaattcagtgacacaataaagaacattccaatcatgtctctaacttcattcgcagccaaaccagaattattatctccaagattgccacatttc |
139768 |
T |
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| Q |
115 |
atccaagtaggggatgatattaacctccacatgagatgtattgcagcaattgtaggagaatttaaatggaaaaaagcgatagcaatttatgaacttaata |
214 |
Q |
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| T |
139769 |
attaaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggagaattcagatggaaaaaggtgacagtaatttatgaacttaata |
139868 |
T |
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| Q |
215 |
atgatttttcctctgatccaggaatactacttagcctctcttat |
258 |
Q |
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| T |
139869 |
atgacttggcctcggatccggggatactactaagcctctcttat |
139912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 24897060 - 24897234
Alignment:
| Q |
84 |
agaattattatctcctagattgccacatttcatccaagtaggggatgatattaacctccacatgagatgtattgcagcaattgtaggagaatttaaatgg |
183 |
Q |
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| T |
24897060 |
agaattattatctcctagattgccacatttcatccaattaggagatgatattaaccatcacatccaatgcattgcagcaattgtaggagaattcagatgg |
24897159 |
T |
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| Q |
184 |
aaaaaagcgatagcaatttatgaacttaataat---gatttttcctctgatccaggaatactacttagcctctct |
255 |
Q |
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| T |
24897160 |
aaaaaggtgacagtaatttatgaacataataatgacgacttttcctctgatccagaaataatactttgtctctct |
24897234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 24909163 - 24909336
Alignment:
| Q |
84 |
agaattattatctcctagattgccacatttcatccaagtaggggatgatattaacctccacatgagatgtattgcagcaattgtaggagaatttaaatgg |
183 |
Q |
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| T |
24909163 |
agaattattatctcctagattgccacatttcatccaactcggagatgatattaaccatcacatccaatgcattgcagcaattgtaggagaattcagatgg |
24909262 |
T |
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| Q |
184 |
aaaaaagcgatagcaatttatgaacttaataatg---atttttcctctgatccaggaatactacttagcctctc |
254 |
Q |
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| T |
24909263 |
aaaaaggtggcagtaatttatgaacataataatgactacttttcctctgatccagaaataatacttagcctctc |
24909336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 24986666 - 24986839
Alignment:
| Q |
84 |
agaattattatctcctagattgccacatttcatccaagtaggggatgatattaacctccacatgagatgtattgcagcaattgtaggagaatttaaatgg |
183 |
Q |
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| T |
24986666 |
agaattattatctcctagattgccacatttcatccaactcagagatgatattaaccatcacatccaatgcattgcagcaattgtaggagaattcagatgg |
24986765 |
T |
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| Q |
184 |
aaaaaagcgatagcaatttatgaacttaataat---gatttttcctctgatccaggaatactacttagcctctc |
254 |
Q |
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| T |
24986766 |
aaaaaggtggcagtaatttatgaacataataatgacgacttttcctctgatccagaaataatacttagcctctc |
24986839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 22770 - 22876
Alignment:
| Q |
86 |
aattattatctcctagattgccacatttcatccaagtaggggatgatattaacc-tccacat-gagatgtattgcagcaattgtaggagaatttaaatgg |
183 |
Q |
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| T |
22770 |
aattattatctcctagattgccacatttcatccaactcagagatgatattaaccatcaacatcccaatgcattgcagcaattgtaggagaattcagatgg |
22869 |
T |
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| Q |
184 |
aaaaaag |
190 |
Q |
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| T |
22870 |
aaaaaag |
22876 |
T |
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